CN189321

Overview
NameCN189321
Unique NameCN189321
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length441
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189321 vs. ExPASy Swiss-Prot
Match: UBP8_HUMAN (Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sapiens GN=USP8 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.839e-12
Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 3 
Query:    3 GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQVSHFS*YACAFCLLKVR 248
            GY+Q DSQELL FL+DGLHEDLN+   +   + +++    D + A   W+ HK  N+S+IV +FQ    S   C  C  K R
Sbjct:  863 GYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSR 944
[Close]
BLAST of CN189321 vs. ExPASy Swiss-Prot
Match: UBP2_MOUSE (Ubiquitin carboxyl-terminal hydrolase 2 OS=Mus musculus GN=Usp2 PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 8.432e-11
Identity = 33/77 (42.86%), Postives = 42/77 (54.55%), Query Frame = 3 
Query:    3 GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQVSHFS*YACAFC 233
            GYNQ D+QE L FLLDGLH ++NRV  +P    +     PDEE   + W+ +  R DS I D+F     S   C  C
Sbjct:  360 GYNQQDAQEFLRFLLDGLHNEVNRVAARPKASPETLDHLPDEEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDC 436
The following BLAST results are available for this feature:
BLAST of CN189321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
UBP8_HUMAN5.839e-1242.68Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sa... [more]
UBP2_MOUSE8.432e-1142.86Ubiquitin carboxyl-terminal hydrolase 2 OS=Mus mus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K20_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189321 ID=CN189321; Name=CN189321; organism=Citrus sinensis; type=EST; length=441bp
ATGGTTATAACCAGCATGATTCTCAGGAACTTCTTGCCTTCTTGCTGGAT
GGACTGCATGAAGATTTGAATCGTGTCAAACAAAAGCCTTATATTGAAAT
GAAGGATTCAGGCGGTCGTCCAGATGAGGAAGTTGCTAATGAATGTTGGA
AAAATCACAAGGCCAGGAATGATTCATTGATTGTGGATGTTTTCCAAGTG
AGTCATTTCTCTTAGTATGCTTGTGCCTTTTGTTTATTGAAAGTTCGGCA
TAATATGCTTGCAGCATGTTTGCACAATTTTATCTAGAAAATAATCTAAG
GCCTATTTGGTATTGAGGTGCTAAGTTGGGGGGGGGTTATGAAATAAAAG
TTGATAGTGTCGGGTAAATATGACTTTCAAATAATAAGTTTGACAAAAAT
GGTAAGGATATTATAGGTTTGTTTTACTTGTGTGGAATAAA
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