CN189319

Overview
NameCN189319
Unique NameCN189319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_ERWCT (Malate dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=mdh PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.665e-20
Identity = 58/99 (58.59%), Postives = 69/99 (69.70%), Query Frame = 2
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  ++G E+   AL G +IV+I AGV RKPGM R DLFN+NA IV+
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGYSG-EDAKPALAGADIVLISAGVARKPGMDRSDLFNVNAGIVR 99          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_MORJA (Malate dehydrogenase OS=Moritella japonica GN=mdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.132e-19
Identity = 58/99 (58.59%), Postives = 66/99 (66.67%), Query Frame = 2
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T   +  F G +    AL G ++V+I AGV RKPGM R DLFNINA I+K
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAAVTPGVAVDLSHIPTDVTIAGFAGTDP-TDALVGADVVLISAGVARKPGMDRSDLFNINAGIIK 99          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_VIBVU (Malate dehydrogenase OS=Vibrio vulnificus GN=mdh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.478e-19
Identity = 58/100 (58.00%), Postives = 70/100 (70.00%), Query Frame = 2
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVKT 754
            KVAV+GAAGGIGQ LALL+K   P  S L LYD+  V  GVAADLSH  T   +  + G E+   AL+G ++V+I AGV RKPGM R DLFN+NA IVK+
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKGYAG-EDPTPALEGADVVLISAGVARKPGMDRADLFNVNAGIVKS 100          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_SHEFN (Malate dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=mdh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.478e-19
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 2
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  +V  F G ++   AL G ++V++ AGV RKPGM R DLFNINA IV+
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTDVEVKGFAG-QDPTDALVGADVVLMSAGVARKPGMDRSDLFNINAGIVR 99          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_AERS4 (Malate dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=mdh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.478e-19
Identity = 60/99 (60.61%), Postives = 68/99 (68.69%), Query Frame = 2
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  +V  F G E+ + AL G ++V+I AGV RKPGM R DLFNIN  IVK
Sbjct:    2 KVAVLGAAGGIGQALALLLKNRLPAGSELSLYDIAPVTPGVAVDLSHIPTDVKVKGFCG-EDPSPALVGADVVLISAGVARKPGMDRSDLFNINPGIVK 99          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_VIBMA (Malate dehydrogenase OS=Vibrio marinus GN=mdh PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.930e-19
Identity = 58/99 (58.59%), Postives = 66/99 (66.67%), Query Frame = 2
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T   +  F G +    AL G ++V+I AGV RKPGM R DLFNINA I+K
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSDLSLYDIAPVTPGVAVDLSHIPTDVTIAGFAGMDP-TDALVGADVVLISAGVARKPGMDRSDLFNINAGIIK 99          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_MORS5 (Malate dehydrogenase OS=Moritella sp. (strain 5710) GN=mdh PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.930e-19
Identity = 58/99 (58.59%), Postives = 66/99 (66.67%), Query Frame = 2
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T   +  F G +    AL G ++V+I AGV RKPGM R DLFNINA I+K
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSDLSLYDIAPVTPGVAVDLSHIPTDVTIAGFAGMDP-TDALVGADVVLISAGVARKPGMDRSDLFNINAGIIK 99          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_SHEDO (Malate dehydrogenase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=mdh PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.293e-19
Identity = 58/99 (58.59%), Postives = 67/99 (67.68%), Query Frame = 2
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F G E+   AL   ++V+I AGV RKPGM R DLFNINA IV+
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAG-EDPTPALVDADVVLISAGVARKPGMDRSDLFNINAGIVR 99          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_HAEDU (Malate dehydrogenase OS=Haemophilus ducreyi GN=mdh PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.134e-18
Identity = 54/105 (51.43%), Postives = 68/105 (64.76%), Query Frame = 2
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELAS------ALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KV VLGAAGGIGQ L+LL+K+  P  + L LYD+  V  G+A D+SH  T    + + G +   +      ALK  N+V+I AG+ RKPGMTR DLFNINA IVK
Sbjct:    2 KVTVLGAAGGIGQTLSLLLKLRLPAGADLALYDISPVTPGIAVDISHIPTSVNAIGYAGEDPSVALKDPSVALKDTNLVIITAGIARKPGMTRADLFNINAGIVK 106          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_VIBMI (Malate dehydrogenase (Fragment) OS=Vibrio mimicus GN=mdh PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.360e-17
Identity = 53/93 (56.99%), Postives = 64/93 (68.82%), Query Frame = 2
Query:  479 AAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            AAGGIGQ LALL+K   P  S L LYD+  V  GVAADLSH  TP  +  + G E+   AL+G ++V++ AGV RKPGM R DLFN+NA IVK
Sbjct:    1 AAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVTIKGYAG-EDPTPALEGADVVLVSAGVARKPGMDRADLFNVNAGIVK 92          
The following BLAST results are available for this feature:
BLAST of CN189319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
MDH_ERWCT8.665e-2058.59Malate dehydrogenase OS=Erwinia carotovora subsp. ... [more]
MDH_MORJA1.132e-1958.59Malate dehydrogenase OS=Moritella japonica GN=mdh ... [more]
MDH_VIBVU1.478e-1958.00Malate dehydrogenase OS=Vibrio vulnificus GN=mdh P... [more]
MDH_SHEFN1.478e-1958.59Malate dehydrogenase OS=Shewanella frigidimarina (... [more]
MDH_AERS41.478e-1960.61Malate dehydrogenase OS=Aeromonas salmonicida (str... [more]
MDH_VIBMA1.930e-1958.59Malate dehydrogenase OS=Vibrio marinus GN=mdh PE=3... [more]
MDH_MORS51.930e-1958.59Malate dehydrogenase OS=Moritella sp. (strain 5710... [more]
MDH_SHEDO3.293e-1958.59Malate dehydrogenase OS=Shewanella denitrificans (... [more]
MDH_HAEDU2.134e-1851.43Malate dehydrogenase OS=Haemophilus ducreyi GN=mdh... [more]
MDH_VIBMI2.360e-1756.99Malate dehydrogenase (Fragment) OS=Vibrio mimicus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K19_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189319 ID=CN189319; Name=CN189319; organism=Citrus sinensis; type=EST; length=754bp
GACGGCTTTCGAAAAAGCGTAGATTCGTTCAAGGCCCATTCGGCGGAGGA
AGAGACACCCAGTTTACAATAACCCTTTCAAAAATCTTCTTCTTCTTCTT
CTCTCTTTCCCCTCAACGCCAGCAGCAACACCACCATCTCTTCCAGCTTC
ACGCAAATCTCAAGTGTCAGAGTGTGAAATGGCCGCTACATCAGCTACAA
CCTTTTCAATTAGATCAACTATTGCCTTTGGCCCCAAGGCAGGCCAACTT
CCACCGTCAAAACCCTCTGGTGTGAGGTTCAACTCCAAGAACTCACTTGT
GAGTTTCAGTGGCCTCAAGGCAGTGACATCAGTTATCTGTGAATCAAATA
CCTCTTTCTTGAACAAGGAGAGTTGTTCAGCTCTTCGAAGCACTTTTGCA
AGAAAAGCCCAAAGTTCAGAGCAGAGGCCTCAGTATGCCCTACAGCCCCA
GGCTTCTTTTAAAGTAGCAGTTCTTGGAGCTGCTGGTGGAATAGGTCAAC
CCTTAGCACTTCTAATCAAGATGTCCCCACTAGTATCAGCCCTTCACCTC
TATGATGTAATGAATGTCAAGGGAGTTGCTGCTGACCTCAGTCACTGCAA
CACTCCCTCTCAAGTTCTGGATTTCACAGGACCTGAAGAATTAGCCAGTG
CTTTGAAAGGGGTGAATATCGTCGTCATACCTGCTGGAGTTCCAAGAAAG
CCTGGGATGACCCGTGATGACCTCTTCAACATCAACGCCAACATAGTAAA
GACC
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