CN189319

Overview
NameCN189319
Unique NameCN189319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189319_ssr85 microsatellite CN189319_ssr85:85..102. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6137 contig Csv1_Contig6137:51..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_KLEPN (Malate dehydrogenase (Fragments) OS=Klebsiella pneumoniae GN=mdh PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.171e-16
Identity = 55/98 (56.12%), Postives = 66/98 (67.35%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVAVL AAGGI Q LALL+K S       LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G ++V+I AGV RKPGM R DLFN+NA IVK
Sbjct:    2 KVAVLXAAGGI-QALALLLKTS-------LYDIAPVTPGVAVDLSHIPTDVKIKGFSG-EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVK 90
[Close]
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_SALMU (Malate dehydrogenase (Fragment) OS=Salmonella muenchen GN=mdh PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.209e-15
Identity = 49/89 (55.06%), Postives = 61/89 (68.54%), Query Frame = 2 
Query:  491 IGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            IGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E++  AL+G ++V+I AGV RKPGM R DLFN+NA IVK
Sbjct:    1 IGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDVTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVK 88
[Close]
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_KLEVA (Malate dehydrogenase (Fragment) OS=Klebsiella variicola GN=mdh PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.481e-11
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = 2 
Query:  548 LYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G ++V+I AGV RKPGM R DLFN+NA IVK
Sbjct:    2 LYDIAPVTPGVAVDLSHIPTDVKIKGFSG-EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVK 69
[Close]
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_KLEPR (Malate dehydrogenase (Fragment) OS=Klebsiella pneumoniae subsp. rhinoscleromatis GN=mdh PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.481e-11
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = 2 
Query:  548 LYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G ++V+I AGV RKPGM R DLFN+NA IVK
Sbjct:    2 LYDIAPVTPGVAVDLSHIPTDVKIKGFSG-EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVK 69
The following BLAST results are available for this feature:
BLAST of CN189319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
MDH_KLEPN1.171e-1656.12Malate dehydrogenase (Fragments) OS=Klebsiella pne... [more]
MDH_SALMU2.209e-1555.06Malate dehydrogenase (Fragment) OS=Salmonella muen... [more]
MDH_KLEVA1.481e-1155.07Malate dehydrogenase (Fragment) OS=Klebsiella vari... [more]
MDH_KLEPR1.481e-1155.07Malate dehydrogenase (Fragment) OS=Klebsiella pneu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K19_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189319 ID=CN189319; Name=CN189319; organism=Citrus sinensis; type=EST; length=754bp
GACGGCTTTCGAAAAAGCGTAGATTCGTTCAAGGCCCATTCGGCGGAGGA
AGAGACACCCAGTTTACAATAACCCTTTCAAAAATCTTCTTCTTCTTCTT
CTCTCTTTCCCCTCAACGCCAGCAGCAACACCACCATCTCTTCCAGCTTC
ACGCAAATCTCAAGTGTCAGAGTGTGAAATGGCCGCTACATCAGCTACAA
CCTTTTCAATTAGATCAACTATTGCCTTTGGCCCCAAGGCAGGCCAACTT
CCACCGTCAAAACCCTCTGGTGTGAGGTTCAACTCCAAGAACTCACTTGT
GAGTTTCAGTGGCCTCAAGGCAGTGACATCAGTTATCTGTGAATCAAATA
CCTCTTTCTTGAACAAGGAGAGTTGTTCAGCTCTTCGAAGCACTTTTGCA
AGAAAAGCCCAAAGTTCAGAGCAGAGGCCTCAGTATGCCCTACAGCCCCA
GGCTTCTTTTAAAGTAGCAGTTCTTGGAGCTGCTGGTGGAATAGGTCAAC
CCTTAGCACTTCTAATCAAGATGTCCCCACTAGTATCAGCCCTTCACCTC
TATGATGTAATGAATGTCAAGGGAGTTGCTGCTGACCTCAGTCACTGCAA
CACTCCCTCTCAAGTTCTGGATTTCACAGGACCTGAAGAATTAGCCAGTG
CTTTGAAAGGGGTGAATATCGTCGTCATACCTGCTGGAGTTCCAAGAAAG
CCTGGGATGACCCGTGATGACCTCTTCAACATCAACGCCAACATAGTAAA
GACC
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