CN189318

Overview
NameCN189318
Unique NameCN189318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189318 vs. ExPASy Swiss-Prot
Match: MDHG_ORYSJ (Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 2.473e-14
Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = -2
Query:  279 YAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE 512
            YAA++F ++ LR L GD  + EC FV S +TELPFFAS+V+LGR G+E ++S  L  L E+E+  LE  K EL  SI+
Sbjct:  273 YAASKFADACLRGLRGDAGIVECSFVASQVTELPFFASKVRLGRCGIEEILS--LGPLNEFERAGLEKAKKELAESIQ 348          
BLAST of CN189318 vs. ExPASy Swiss-Prot
Match: MDHG2_BRANA (Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.094e-13
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = -2
Query:  279 YAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE 512
            YAAA+F ++ LR L GD +V EC FV S +TEL FFA++V+LGR G E +    L  L EYE+  LE  K EL  SI+
Sbjct:  275 YAAAKFADACLRGLRGDANVIECSFVASQVTELAFFATKVRLGRTGAEEVF--QLGPLNEYERVGLEKAKEELAGSIQ 350          
BLAST of CN189318 vs. ExPASy Swiss-Prot
Match: MDHG2_ARATH (Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.094e-13
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = -2
Query:  282 YAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASI 512
            YAA  F ++ LR L GD ++ EC +V S++TELPFFAS+V+LGR G++ +    L  L EYE+  LE  K EL  SI
Sbjct:  271 YAAVEFADACLRGLRGDANIVECAYVASHVTELPFFASKVRLGRCGIDEVYG--LGPLNEYERMGLEKAKKELSVSI 345          
BLAST of CN189318 vs. ExPASy Swiss-Prot
Match: MDHG1_BRANA (Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.094e-13
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = -2
Query:  279 YAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE 512
            YAAA+F ++ LR L GD +V EC FV S +TEL FFA++V+LGR G E +    L  L EYE+  LE  K EL  SI+
Sbjct:  275 YAAAKFADACLRGLRGDANVIECSFVASQVTELAFFATKVRLGRTGAEEVF--QLGPLNEYERVGLEKAKEELAGSIQ 350          
BLAST of CN189318 vs. ExPASy Swiss-Prot
Match: MDHG1_ARATH (Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.571e-13
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = -2
Query:  279 YAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE 512
            YAAA+F ++ LR L GD +V EC FV S +TEL FFA++V+LGR G E +    L  L EYE+  LE  K EL  SI+
Sbjct:  271 YAAAKFADACLRGLRGDANVVECSFVASQVTELAFFATKVRLGRTGAEEVY--QLGPLNEYERIGLEKAKDELAGSIQ 346          
BLAST of CN189318 vs. ExPASy Swiss-Prot
Match: MDHM_CHLRE (Malate dehydrogenase, mitochondrial OS=Chlamydomonas reinhardtii PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.092e-13
Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = -2
Query:  279 YAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE 512
            YAAA F +S LR L+G   V EC +VES +T+ P+FAS+VKL   GV+ +   DL  L++YE+  L+A+ PEL ASIE
Sbjct:  290 YAAALFADSCLRGLNG-APVVECTYVESTVTDAPYFASKVKLSTEGVDKI--HDLGPLSDYEKAGLKAMMPELLASIE 364          
The following BLAST results are available for this feature:
BLAST of CN189318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
MDHG_ORYSJ2.473e-1451.28Malate dehydrogenase, glyoxysomal OS=Oryza sativa ... [more]
MDHG2_BRANA2.094e-1351.28Malate dehydrogenase 2, glyoxysomal OS=Brassica na... [more]
MDHG2_ARATH2.094e-1349.35Probable malate dehydrogenase, glyoxysomal OS=Arab... [more]
MDHG1_BRANA2.094e-1351.28Malate dehydrogenase 1, glyoxysomal OS=Brassica na... [more]
MDHG1_ARATH3.571e-1351.28Malate dehydrogenase, glyoxysomal OS=Arabidopsis t... [more]
MDHM_CHLRE6.092e-1351.28Malate dehydrogenase, mitochondrial OS=Chlamydomon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K19_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189318 ID=CN189318; Name=CN189318; organism=Citrus sinensis; type=EST; length=513bp
TTTTTTTTTTTTCCATAAGAATGCTTATATTTCTTCCGATCTACAACAGC
GATGTACCCACTCAAGACTCCATATTTTGCGCTTTAAAACTTAAAAATGA
GATGAAAACCTCCTGTTCTACAAAAATGAAAGTACTGATGCAAAGAAAAT
TCCACAATTTGAAAAAACCAGACTCATCCATTCTTCTCTAGGGGATGTTA
ATTTCATGAGGTTAGGGTTTCAAATAACTTTCAACCCTATGCAGCTACTG
CTTGCTTCTGCGCAAATGCAACCCCCTTTTCAATACTGGCCTTCAGCTCG
GGTTTAAGGGCTTCCAAAGCCTTTTGTTCATACTCAGTCAACCCTTGGAG
ATCAGATGAAATCAAAGATTCAACACCATTCCTTCCAAGCTTAACCCTAG
ATGCAAAGAACGGAAGCTCAGTCAGATTGGACTCCACGAAAACGCATTCA
TACACGTCCCCATCTCCATCAAGAGCACGAAGTGAAGACTCGACAAATCT
TGCTGCTGCATAT
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