CN189313

Overview
NameCN189313
Unique NameCN189313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_HELPY (Cell division protease ftsH homolog OS=Helicobacter pylori GN=ftsH PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.420e-20
Identity = 54/125 (43.20%), Postives = 79/125 (63.20%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIG 378
            AG+EKK+ ++   EK +VA HE+GHAV+    + +  G  RV K+SI+PR   ALG+T     E++YL+   EL   +  LLGGRAAE+V +   ISTGA +D+ RATD+    ++ YG++   G
Sbjct:  414 AGLEKKSRRISPKEKKIVAYHESGHAVI----SEMTKGSARVNKVSIIPRGMAALGYTLNTPEENKYLMQKHELIAEIDVLLGGRAAEDV-FLEEISTGASNDLERATDIIKGMVSYYGMSSVSG 533          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_BACSU (Cell division protease ftsH homolog OS=Bacillus subtilis GN=ftsH PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.420e-20
Identity = 65/191 (34.03%), Postives = 101/191 (52.88%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRD-------QGQLVDLVQREVKALLQSALEVALCVVRANPDVLE 555
            AG  KK+  +   E+ +VA HE GH V+G     +L     V K++I+PR G A G+      EDRY     EL  ++V LLGGR AEE+ + G +STGA +D +RAT++A + + E+G++  +GP+             GG V  GRD         Q+   + +E++ +++   E A  ++  N D LE
Sbjct:  403 AGPAKKSRVISKKERNIVAYHEGGHTVIGL----VLDEADMVHKVTIVPR-GQAGGYAVMLPREDRYFQTKPELLDKIVGLLGGRVAEEIIF-GEVSTGAHNDFQRATNIARRMVTEFGMSEKLGPLQFG-------QSQGGQVFLGRDFNNEQNYSDQIAYEIDQEIQRIIKECYERAKQILTENRDKLE 580          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_AQUAE (Cell division protease ftsH homolog OS=Aquifex aeolicus GN=ftsH PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.160e-20
Identity = 63/187 (33.69%), Postives = 108/187 (57.75%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQG-QLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            G+E+K   +   EK  +A HEAGHA++G     +     +V K+SI+PR G ALG T     ED+++    +L  +++ LLGGRAAEEV +    I+TGA +D++RATD+AY+ ++ +G++  +GP++I  +++  +    GG+    D    L+  +  EVK ++    E A  +V    + L+ +
Sbjct:  399 GLERKGMTISPKEKEKIAIHEAGHALMGL----VSDDDDKVHKISIIPR-GMALGVTQQLPIEDKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFL----GGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAV 576          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: AFG31_MOUSE (AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.128e-20
Identity = 70/187 (37.43%), Postives = 107/187 (57.22%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFT-YTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLG 564
            G+EKKT  L+ SEK  VA HEAGHAVVG  +    P    + K+SI+PR G  LG+  Y P   +++L   ++L  R+  +LGGR AE++ + G+I+TGA DD+R+ T  AY  I ++G++  +G VS      G   E+    P+     QL+D    EV+ L++SA    L ++    + +E +G
Sbjct:  547 GLEKKTQVLQPSEKTTVAYHEAGHAVVGWFLEHADP----LLKVSIIPR-GKGLGYAQYLP--REQFLYTREQLFDRMCMMLGGRVAEQL-FFGQITTGAQDDLRKVTQSAYAQIVQFGMSEKLGQVSFDFPRQG---ETMVEKPYSEATAQLID---EEVRCLVRSAYNRTLELLTQCREQVEKVG 719          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPU (Cell division protease ftsH homolog OS=Mycoplasma pulmonis GN=ftsH PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.564e-19
Identity = 67/188 (35.64%), Postives = 102/188 (54.26%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGR-ISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSG---GIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLE 555
            AG  KK+  +   E   VA HEAGHAVVG  V     G  +V+K++I+PR G A G+      E++Y     EL   + + +GGRAAE + Y    ISTGA DDI RAT +A K + E+G++  +GP+     +     G D S G   +G      +DL   E++ ++ ++ E+A+  +  N ++LE
Sbjct:  454 AGPAKKSRVISQEELKAVAYHEAGHAVVGLKVK----GGNKVQKITIIPR-GNAGGYNLMTPEEEKYNASKKELLATIASYMGGRAAEMIIYGKENISTGASDDISRATKIARKMVTEWGMS-ALGPIKYEEDTENPFLGRDYSKG--TFGSKMAHEIDL---EIRKIISASEEIAIKAIEQNLELLE 630          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.784e-19
Identity = 64/168 (38.10%), Postives = 94/168 (55.95%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFT-YTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSA 507
            G+EKKT  L+  EK  VA HEAGHAV G  +    P    + K+SI+PR G  LG+  Y P  +++YL   ++L  R+   LGGR +EE+ + GRI+TGA DD+R+ T  AY  I ++G+N  +G +S      G +       P+     +L+D    EV+ L+  A
Sbjct:  555 GLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADP----LLKVSIIPR-GKGLGYAQYLP--KEQYLYTKEQLLDRMCMTLGGRVSEEIFF-GRITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQGDMVLE---KPYSEATARLID---DEVRILINDA 708          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.017e-18
Identity = 56/128 (43.75%), Postives = 80/128 (62.50%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFT-YTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVS 387
            G+EKKT  L+  EK  VA HEAGHAV G  +    P    + K+SI+PR G  LG+  Y P  +++YL   ++L  R+   LGGR +EE+ + GRI+TGA DD+R+ T  AY  I ++G+N  +G +S
Sbjct:  554 GLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADP----LLKVSIIPR-GKGLGYAQYLP--KEQYLYTKEQLLDRMCMTLGGRVSEEIFF-GRITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQIS 673          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: AFG32_BOVIN (AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.017e-18
Identity = 64/168 (38.10%), Postives = 93/168 (55.36%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFT-YTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSA 507
            G+EKKT  L+  EK  VA HEAGHAV G  +    P    + K+SI+PR G  LG+  Y P   ++YL   ++L  R+   LGGR +EE+ + GRI+TGA DD+R+ T  AY  I ++G+N  +G +S      G +       P+     +L+D    EV+ L+  A
Sbjct:  556 GLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADP----LLKVSIIPR-GKGLGYAQYLP--REQYLYTREQLLDRMCMTLGGRVSEEIFF-GRITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQGDMVLE---KPYSEATARLID---DEVRILINDA 709          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_ODOSI (Cell division protease ftsH homolog OS=Odontella sinensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.734e-18
Identity = 56/171 (32.75%), Postives = 95/171 (55.56%), Query Frame = 1
Query:   46 KAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAY-SGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLE 555
            K ++A HE GHA+ G    S+L     VEK+++ PR GGA G T+    ED+ LL    L  R++T LGGRAAE+V +    ++TGA  D+++ T++A + +  +G++  IGP+++   S+G +   G           + D +  EV+ ++    E A+ +V  N  V++
Sbjct:  441 KRLIAYHEVGHAITG----SVLKSHDEVEKITLTPR-GGAKGLTWFTPEEDQSLLSRSALLARIITTLGGRAAEQVIFGEPEVTTGASSDLQQVTNLARQMVTRFGMS-NIGPLALEDESTGQVFLGGNMASGSEYAENIADRIDDEVRKIITYCYEKAIEIVLDNRVVID 605          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.958e-18
Identity = 66/188 (35.11%), Postives = 102/188 (54.26%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSG--GIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            AG  KK+  L   E+ VVA HE+GHA+VG     +L     V K+SI PRT  ALGF       D++L   ++L  R+   LGGRA+E ++++  +++GA DD+R+ T +AY  + ++G+   IGP+S      G  GI    G  P+ +   Q++D    E + L+  A      V++ N D L+ L
Sbjct:  554 AGTAKKSKILSKEEQKVVAFHESGHALVGW----MLEHTEAVMKVSITPRTNAALGFAQM-LPRDQHLFTKEQLFERMCMALGGRASEALSFN-EVTSGAQDDLRKVTRIAYSMVKQFGMAPGIGPISFPEAQEGLMGI----GRRPFSQGLQQMMD---HEARLLVAKAYRHTEKVLQDNLDKLQAL 728          
The following BLAST results are available for this feature:
BLAST of CN189313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
FTSH_HELPY2.420e-2043.20Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_BACSU2.420e-2034.03Cell division protease ftsH homolog OS=Bacillus su... [more]
FTSH_AQUAE3.160e-2033.69Cell division protease ftsH homolog OS=Aquifex aeo... [more]
AFG31_MOUSE4.128e-2037.43AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2... [more]
FTSH_MYCPU4.564e-1935.64Cell division protease ftsH homolog OS=Mycoplasma ... [more]
AFG32_HUMAN7.784e-1938.10AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]
AFG32_MOUSE1.017e-1843.75AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]
AFG32_BOVIN1.017e-1838.10AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 S... [more]
FTSH_ODOSI1.734e-1832.75Cell division protease ftsH homolog OS=Odontella s... [more]
SPG7_HUMAN2.958e-1835.11Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189313 ID=CN189313; Name=CN189313; organism=Citrus sinensis; type=EST; length=784bp
GAGGCTGGCATAGAGAAGAAAACTGCAAAGTTAAAGGGGAGTGAGAAGGC
TGTGGTTGCAAGGCATGAAGCTGGTCACGCAGTAGTAGGCACTGCAGTTG
CAAGTCTTCTTCCTGGACAGCCACGTGTCGAGAAACTAAGCATATTGCCA
AGGACAGGAGGGGCACTGGGATTTACTTATACTCCAGCAAATGAGGATAG
ATATCTGCTGTTCATTGATGAGTTATGTGGTCGCCTGGTTACTCTACTTG
GAGGACGTGCAGCAGAAGAAGTTGCTTATTCCGGTCGTATTTCCACTGGT
GCTCTTGATGACATACGGCGAGCAACCGACATGGCGTACAAGGCAATAGC
TGAATATGGTCTTAATCGGACAATAGGCCCTGTGTCTATAGCCACACTTT
CGAGTGGTGGGATTGATGAATCTGGGGGAGGTGTTCCATGGGGAAGAGAT
CAGGGGCAGCTAGTTGACCTTGTACAAAGGGAGGTGAAAGCATTATTGCA
ATCAGCCCTGGAAGTAGCACTCTGTGTTGTTCGTGCTAATCCTGATGTTT
TGGAGGGGCTTGGTGCCTGTCTGGAAGAAAAAGAGAAAGTAGAAGGGGAA
GAGCTGCAAGAATGGTTGGGAATGGTGGTTGCGCCTATAGAACTCTCGAA
CTTTGTTGCTGGCAGACAAGAGGTTCTTCCCCCCTGTACAAGGATCTCTC
CTCCCACTCCAAGGAAGCTCTGGGTAACAATTACTGTTCACTGCTCTACT
CCACATTGAAGCAAAGAGAGCTATCTTACTGCTC
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