CN189313

Overview
NameCN189313
Unique NameCN189313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_MEDSA (Cell division protease ftsH homolog, chloroplastic OS=Medicago sativa GN=FTSH PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.958e-18
Identity = 66/190 (34.74%), Postives = 101/190 (53.16%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRY---LLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQ-LVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            AG EKK A +   +K +VA HEAGHA+VG    +L+P    V K+SI+PR G A G T+   +E+R    L     L  ++   LGGR AEEV     ++TGA +D  + + +A + +  +G ++ IG V+I     GG    G  +   +D      D+V +EV+ L+  A E A  ++  + D+L  L
Sbjct:  495 AGPEKKNAVVSEEKKKLVAYHEAGHALVG----ALMPEYDPVAKISIIPR-GQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVFGQDNVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIG--GGGGNPFLGQQMSSQKDYSMATADIVDKEVRELVDKAYERATQIINTHIDILHKL 677          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.607e-18
Identity = 65/187 (34.76%), Postives = 104/187 (55.61%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAY-SGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            AG+E  T    G  K++VA HE GHAV GT    L PG   V+K++++PR G A G T+   ++D  L+   +L  R+V  LGGRAAEE+ +    ++TGA+ D+++ T +A + +  +G++  IGP S+   SS   D     +       +L + +   VK L  SA E+AL  ++ N + ++ L
Sbjct:  469 AGMEG-TVMTDGKSKSLVAYHEVGHAVCGT----LTPGHDAVQKVTLIPR-GQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEIIFGDSEVTTGAVGDLQQITGLARQMVTTFGMS-DIGPWSLMD-SSAQSDVIMRMMARNSMSEKLAEDIDSAVKKLSDSAYEIALSHIKNNREAMDKL 647          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH2_SYNY3 (Cell division protease ftsH homolog 2 OS=Synechocystis sp. (strain PCC 6803) GN=slr1390 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.124e-17
Identity = 59/188 (31.38%), Postives = 106/188 (56.38%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAY-SGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDL---VQREVKALLQSALEVALCVVRANPDVLE 555
            AG+E  T  +    K ++A HE GHA++GT    L PG   VEK++++PR G A G T+   +ED+ L+  +++  R+  LLGGR AEEV +    ++TGA +DI + T +A + + + G++     + +  L   G D +  G  WG+      D+   + RE++A++ +A + A  ++  N ++++
Sbjct:  453 AGMEG-TPLVDSKSKRLIAYHEVGHALIGT----LCPGHDPVEKVTLIPR-GQAQGLTWFTPDEDQSLMTRNQMIARIAGLLGGRVAEEVIFGDDEVTTGAGNDIEKITYLARQMVTKLGMS----SLGLVALEEEG-DRNFSGGDWGKRSEYSEDIAARIDREIQAIVTAAHQRATRIIEENRNLMD 629          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.468e-17
Identity = 64/185 (34.59%), Postives = 102/185 (55.14%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAY-SGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLE 555
            AG+E  T    G  K++VA HE GHA+ GT    L PG   V+K++++PR G A G T+   ++D  L+   +L  R+V  LGGRAAEEV +    ++TGA+ D+++ T +A + +  +G++  IGP S+   SS   D     +       +L + +   VK L   A E+AL  +R N + ++
Sbjct:  462 AGMEG-TVMTDGKSKSLVAYHEVGHAICGT----LTPGHDAVQKVTLIPR-GQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGESEVTTGAVSDLQQITGLAKQMVTTFGMSE-IGPWSLMD-SSEQSDVIMRMMARNSMSEKLANDIDTAVKTLSDKAYEIALSQIRNNREAMD 638          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH4_SYNY3 (Cell division protease ftsH homolog 4 OS=Synechocystis sp. (strain PCC 6803) GN=slr1604 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.917e-17
Identity = 65/197 (32.99%), Postives = 101/197 (51.27%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRY---LLFIDELCGRLVTLLGGRAAEEVAY-SGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRD-------QGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            AG EKK   +    K +VA HEAGHA+VG    +L+P    V+K+SI+PR G A G T+   +EDR    L     L  ++   LGGR AEE+ +    ++TGA +D+++   +A + +  +G++  +GPV++           GGGV  GRD         +    +  EV  L+  A + A  V+  N  +L+ L
Sbjct:  403 AGPEKKNRVMSEKRKTLVAYHEAGHALVG----ALMPDYDPVQKISIIPR-GRAGGLTWFTPSEDRMESGLYSRSYLQNQMAVALGGRIAEEIIFGEEEVTTGASNDLQQVARVARQMVTRFGMSDRLGPVALG--------RQGGGVFLGRDIASDRDFSDETAAAIDEEVSQLVDQAYQRAKQVLVENRGILDQL 586          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_PORPU (Cell division protease ftsH homolog OS=Porphyra purpurea GN=ftsH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.504e-17
Identity = 58/188 (30.85%), Postives = 108/188 (57.45%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAY-SGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRD-QGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            AG+E  T  +    K ++A HE GHA++G    SLL     V+K++++PR G A G T+   ++D+ L+   ++  R+V  LGGRAAEE+ +    ++TGA +D+++ T MA + +  +G+++ IGP+S+   S G     G G+  G +   ++   + ++V+ ++    + A  +V+ N  V++ L
Sbjct:  415 AGLEG-TPLIDSKSKRLIAYHEVGHAIIG----SLLEHHDPVQKVTLIPR-GQARGLTWFTPSDDQSLISRSQILARIVGALGGRAAEEIIFGDAEVTTGASNDLQQVTSMARQMVTRFGMSK-IGPLSLE--SQGSDPFLGRGMGGGSEYSDEVATNIDKQVREIVSECYKEAKKIVKDNRVVMDRL 593          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_CAPAN (Cell division protease ftsH homolog, chloroplastic (Fragment) OS=Capsicum annuum GN=FTSH PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.579e-17
Identity = 66/191 (34.55%), Postives = 101/191 (52.88%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRY---LLFIDELCGRLVTLLGGRAAEEVAY-SGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQ-LVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            AG EKK A +   +K +VA HEAGHA+VG    +L+P    V K+SI+PR G A G T+   +E+R    L     L  ++   LGGR AEEV +    ++TGA +D  + + +A + +   G ++ IG V+I     GG    G  +   +D      D+V  EV+ L++ A E A  ++  + D+L  L
Sbjct:  472 AGPEKKNAVVSDEKKKLVAYHEAGHALVG----ALMPEYDPVAKISIIPR-GQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEDNVTTGASNDFMQVSRVARQMVERLGFSKKIGQVAIG--GGGGNPFLGQQMSTQKDYSMATADVVDSEVRELVEKAYERAKQIITTHIDILHKL 655          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.579e-17
Identity = 61/185 (32.97%), Postives = 100/185 (54.05%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAY-SGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLE 555
            AG+E  T    G  K++VA HE GHA+ GT    L PG   V+K++++PR G A G T+    +D  L+   +L  R+V  LGGRAAEE+ +    ++TGA  D+++ T +A + +  +G++  IGP S+    +   D     +       +L + +   VK L   A E+AL  +R+N + ++
Sbjct:  456 AGMEG-TVMTDGKSKSLVAYHEVGHAICGT----LTPGHDPVQKVTLIPR-GQARGLTWFIPMDDPTLISRQQLFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMS-DIGPWSLMDSGAQSGDVIMRMMARNSMSEKLAEDIDTAVKRLSDEAYEIALSQIRSNREAMD 633          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.579e-17
Identity = 58/188 (30.85%), Postives = 107/188 (56.91%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAY-SGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRD-QGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            AG+E  T  +    K ++A HE GHA++G    SLL     V+K++++PR G A G T+   ++D+ L+   ++  R+V  LGGRAAEE+ +    ++TGA +D+++ T MA + +  +G+++ IGP+S+   S GG    G G+  G +   ++   + ++V+ ++      A  ++  N  V++ L
Sbjct:  415 AGMEG-TPLIDSKSKRLIAYHEVGHAIIG----SLLEHHDPVQKVTLIPR-GQARGLTWFTPSDDQSLISRSQILARIVGALGGRAAEEIIFGDAEVTTGASNDLQQVTSMARQMVTRFGMSK-IGPLSLE--SQGGDPFLGRGMGGGSEYSDEVATNIDKQVREIVSECYAQAKHIIIDNRVVIDRL 593          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_GUITH (Cell division protease ftsH homolog OS=Guillardia theta GN=ftsH PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.286e-17
Identity = 59/189 (31.22%), Postives = 107/189 (56.61%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGI--DESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            AG+E K A +    K ++A HE GHA++GT    LL     V+K++++PR G A G T+   +ED+ L+   ++  R++  LGGRAAEEV +    ++TGA +D+++ T MA + +  +G++  IGP+S+ + +S        G    +  D    +D+   +V+A++Q      + +++ N  V++ L
Sbjct:  415 AGMEGK-ALVDSKTKRLIAYHEVGHAIIGT----LLKHHDPVQKVTLVPR-GQAKGLTWFTPSEDQSLISRSQILARIMGALGGRAAEEVVFGLPEVTTGAGNDLQQVTSMARQMVTRFGMS-NIGPLSLESQNSDPFLGRTMGSSSQYSEDIASRIDM---QVRAIIQHCHTETVQIIKDNRVVIDKL 593          
The following BLAST results are available for this feature:
BLAST of CN189313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
FTSH_MEDSA2.958e-1834.74Cell division protease ftsH homolog, chloroplastic... [more]
FTSH2_ARATH8.607e-1834.76Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH2_SYNY31.124e-1731.38Cell division protease ftsH homolog 2 OS=Synechocy... [more]
FTSH8_ARATH1.468e-1734.59Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH4_SYNY31.917e-1732.99Cell division protease ftsH homolog 4 OS=Synechocy... [more]
FTSH_PORPU2.504e-1730.85Cell division protease ftsH homolog OS=Porphyra pu... [more]
FTSH_CAPAN5.579e-1734.55Cell division protease ftsH homolog, chloroplastic... [more]
FTSH2_ORYSJ5.579e-1732.97Cell division protease ftsH homolog 2, chloroplast... [more]
FSTH_PORYE5.579e-1730.85Cell division protease ftsH homolog OS=Porphyra ye... [more]
FTSH_GUITH7.286e-1731.22Cell division protease ftsH homolog OS=Guillardia ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001K16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189313 ID=CN189313; Name=CN189313; organism=Citrus sinensis; type=EST; length=784bp
GAGGCTGGCATAGAGAAGAAAACTGCAAAGTTAAAGGGGAGTGAGAAGGC
TGTGGTTGCAAGGCATGAAGCTGGTCACGCAGTAGTAGGCACTGCAGTTG
CAAGTCTTCTTCCTGGACAGCCACGTGTCGAGAAACTAAGCATATTGCCA
AGGACAGGAGGGGCACTGGGATTTACTTATACTCCAGCAAATGAGGATAG
ATATCTGCTGTTCATTGATGAGTTATGTGGTCGCCTGGTTACTCTACTTG
GAGGACGTGCAGCAGAAGAAGTTGCTTATTCCGGTCGTATTTCCACTGGT
GCTCTTGATGACATACGGCGAGCAACCGACATGGCGTACAAGGCAATAGC
TGAATATGGTCTTAATCGGACAATAGGCCCTGTGTCTATAGCCACACTTT
CGAGTGGTGGGATTGATGAATCTGGGGGAGGTGTTCCATGGGGAAGAGAT
CAGGGGCAGCTAGTTGACCTTGTACAAAGGGAGGTGAAAGCATTATTGCA
ATCAGCCCTGGAAGTAGCACTCTGTGTTGTTCGTGCTAATCCTGATGTTT
TGGAGGGGCTTGGTGCCTGTCTGGAAGAAAAAGAGAAAGTAGAAGGGGAA
GAGCTGCAAGAATGGTTGGGAATGGTGGTTGCGCCTATAGAACTCTCGAA
CTTTGTTGCTGGCAGACAAGAGGTTCTTCCCCCCTGTACAAGGATCTCTC
CTCCCACTCCAAGGAAGCTCTGGGTAACAATTACTGTTCACTGCTCTACT
CCACATTGAAGCAAAGAGAGCTATCTTACTGCTC
back to top