CN189313

Overview
NameCN189313
Unique NameCN189313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH1_ARATH (Cell division protease ftsH homolog 1, chloroplastic OS=Arabidopsis thaliana GN=FTSH1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 7.286e-17
Identity = 65/191 (34.03%), Postives = 102/191 (53.40%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRY---LLFIDELCGRLVTLLGGRAAEEVAYSG-RISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQ-LVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            AG EKK A +   +K +VA HEAGHA+VG    +L+P    V K+SI+PR G A G T+   +E+R    L     L  ++   LGGR AEEV +    ++TGA +D  + + +A + I  +G ++ IG V++     GG    G  +   +D      D+V  EV+ L++ A + A  ++  + D+L  L
Sbjct:  504 AGPEKKNAVVSEEKKRLVAYHEAGHALVG----ALMPEYDPVAKISIIPR-GQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQVSRVARQMIERFGFSKKIGQVAVG--GPGGNPFMGQQMSSQKDYSMATADIVDAEVRELVEKAYKRATEIITTHIDILHKL 687          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_SALTY (Cell division protease ftsH OS=Salmonella typhimurium GN=ftsH PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.516e-17
Identity = 61/193 (31.61%), Postives = 99/193 (51.30%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRD-------QGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            G E+++  +  ++K   A HEAGHA++G     L+P    V K++I+PR G ALG T+     D       +L  ++ TL GGR AEE+ Y    +STGA +DI+ AT++A   + ++G +  +GP+  A        E  G V  GR          +   ++ +EVKAL++     A  ++  N D+L  +
Sbjct:  395 GAERRSMVMTEAQKESTAYHEAGHAIIGR----LVPEHDPVHKVTIIPR-GRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGVEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYA--------EEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQILTDNMDILHAM 574          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_SALTI (Cell division protease ftsH OS=Salmonella typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.516e-17
Identity = 61/193 (31.61%), Postives = 99/193 (51.30%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRD-------QGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            G E+++  +  ++K   A HEAGHA++G     L+P    V K++I+PR G ALG T+     D       +L  ++ TL GGR AEE+ Y    +STGA +DI+ AT++A   + ++G +  +GP+  A        E  G V  GR          +   ++ +EVKAL++     A  ++  N D+L  +
Sbjct:  395 GAERRSMVMTEAQKESTAYHEAGHAIIGR----LVPEHDPVHKVTIIPR-GRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGVEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYA--------EEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQILTDNMDILHAM 574          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_STRR6 (Cell division protease ftsH homolog OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=ftsH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.243e-16
Identity = 59/179 (32.96%), Postives = 94/179 (52.51%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRAN 540
            AG  KK   +   E+ +VA HEAGH +VG  +++       V K++I+PR G A G+      ED+ LL  +++  +L  L+GGR AEE+ ++ + +TGA +D  +AT MA   + EYG++  +GPV       G     G   P      Q    +  EV++LL  A   A  ++++N
Sbjct:  429 AGPSKKDKTVSQKERELVAYHEAGHTIVGLVLSNARV----VHKVTIVPR-GRAGGYMIALPKEDQMLLSKEDMKEQLAGLMGGRVAEEIIFNVQ-TTGASNDFEQATQMARAMVTEYGMSEKLGPVQY----EGNHAMLGAQSPQKSISEQTAYEIDEEVRSLLNEARNKAAEIIQSN 597          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_STRPN (Cell division protease ftsH homolog OS=Streptococcus pneumoniae GN=ftsH PE=3 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.243e-16
Identity = 59/179 (32.96%), Postives = 94/179 (52.51%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRAN 540
            AG  KK   +   E+ +VA HEAGH +VG  +++       V K++I+PR G A G+      ED+ LL  +++  +L  L+GGR AEE+ ++ + +TGA +D  +AT MA   + EYG++  +GPV       G     G   P      Q    +  EV++LL  A   A  ++++N
Sbjct:  429 AGPSKKDKTVSQKERELVAYHEAGHTIVGLVLSNARV----VHKVTIVPR-GRAGGYMIALPKEDQMLLSKEDMKEQLAGLMGGRVAEEIIFNVQ-TTGASNDFEQATQMARAMVTEYGMSEKLGPVQY----EGNHAMLGAQSPQKSISEQTAYEIDEEVRSLLNEARNKAAEIIQSN 597          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_SHIFL (Cell division protease ftsH OS=Shigella flexneri GN=ftsH PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.623e-16
Identity = 61/193 (31.61%), Postives = 99/193 (51.30%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGR-ISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRD-------QGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            G E+++  +  ++K   A HEAGHA++G     L+P    V K++I+PR G ALG T+     D       +L  ++ TL GGR AEE+ Y    +STGA +DI+ AT++A   + ++G +  +GP+  A        E  G V  GR          +   ++ +EVKAL++     A  ++  N D+L  +
Sbjct:  395 GAERRSMVMTEAQKESTAYHEAGHAIIGR----LVPEHDPVHKVTIIPR-GRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYA--------EEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTDNMDILHAM 574          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_ECOLI (Cell division protease ftsH OS=Escherichia coli (strain K12) GN=ftsH PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.623e-16
Identity = 61/193 (31.61%), Postives = 99/193 (51.30%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGR-ISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRD-------QGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            G E+++  +  ++K   A HEAGHA++G     L+P    V K++I+PR G ALG T+     D       +L  ++ TL GGR AEE+ Y    +STGA +DI+ AT++A   + ++G +  +GP+  A        E  G V  GR          +   ++ +EVKAL++     A  ++  N D+L  +
Sbjct:  395 GAERRSMVMTEAQKESTAYHEAGHAIIGR----LVPEHDPVHKVTIIPR-GRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYA--------EEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTDNMDILHAM 574          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_ECO57 (Cell division protease ftsH OS=Escherichia coli O157:H7 GN=ftsH PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.623e-16
Identity = 61/193 (31.61%), Postives = 99/193 (51.30%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGR-ISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRD-------QGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            G E+++  +  ++K   A HEAGHA++G     L+P    V K++I+PR G ALG T+     D       +L  ++ TL GGR AEE+ Y    +STGA +DI+ AT++A   + ++G +  +GP+  A        E  G V  GR          +   ++ +EVKAL++     A  ++  N D+L  +
Sbjct:  395 GAERRSMVMTEAQKESTAYHEAGHAIIGR----LVPEHDPVHKVTIIPR-GRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYA--------EEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTDNMDILHAM 574          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH5_ARATH (Cell division protease ftsH homolog 5, chloroplastic OS=Arabidopsis thaliana GN=FTSH5 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.120e-16
Identity = 64/191 (33.51%), Postives = 101/191 (52.88%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRY---LLFIDELCGRLVTLLGGRAAEEVAYSG-RISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQ-LVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            AG EKK A +   +K +VA HEAGHA+VG    +L+P    V K+SI+PR G A G T+   +E+R    L     L  ++   LGGR AEEV +    ++TGA +D  + + +A + +  +G ++ IG V++    +GG    G  +   +D      D+V  EV+ L++ A   A  ++    D+L  L
Sbjct:  492 AGPEKKNAVVSEEKKRLVAYHEAGHALVG----ALMPEYDPVAKISIIPR-GQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAVG--GAGGNPFLGQSMSSQKDYSMATADVVDAEVRELVEKAYVRAKEIITTQIDILHKL 675          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH1_SYNY3 (Cell division protease ftsH homolog 1 OS=Synechocystis sp. (strain PCC 6803) GN=slr0228 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.120e-16
Identity = 60/188 (31.91%), Postives = 106/188 (56.38%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAY-SGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQG-QLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            AG+E  T  +    K ++A HE GHA+VGT    LL     V+K++++PR G A G T+   NE++ L    +L  R+   +GGRAAEE  +    ++TGA  D+++ T+MA + +  +G++  +GP+S+   SSGG    GGG+    +   ++   +  +V+ L +   ++A  +V+   +V++ L
Sbjct:  414 AGMEG-TPLVDSKSKRLIAYHEVGHAIVGT----LLKDHDPVQKVTLIPR-GQAQGLTWFTPNEEQGLTTKAQLMARIAGAMGGRAAEEEVFGDDEVTTGAGGDLQQVTEMARQMVTRFGMS-NLGPISLE--SSGGEVFLGGGLMNRSEYSEEVATRIDAQVRQLAEQGHQMARKIVQEQREVVDRL 592          
The following BLAST results are available for this feature:
BLAST of CN189313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
FTSH1_ARATH7.286e-1734.03Cell division protease ftsH homolog 1, chloroplast... [more]
FTSH_SALTY9.516e-1731.61Cell division protease ftsH OS=Salmonella typhimur... [more]
FTSH_SALTI9.516e-1731.61Cell division protease ftsH OS=Salmonella typhi GN... [more]
FTSH_STRR61.243e-1632.96Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH_STRPN1.243e-1632.96Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH_SHIFL1.623e-1631.61Cell division protease ftsH OS=Shigella flexneri G... [more]
FTSH_ECOLI1.623e-1631.61Cell division protease ftsH OS=Escherichia coli (s... [more]
FTSH_ECO571.623e-1631.61Cell division protease ftsH OS=Escherichia coli O1... [more]
FTSH5_ARATH2.120e-1633.51Cell division protease ftsH homolog 5, chloroplast... [more]
FTSH1_SYNY32.120e-1631.91Cell division protease ftsH homolog 1 OS=Synechocy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001K16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189313 ID=CN189313; Name=CN189313; organism=Citrus sinensis; type=EST; length=784bp
GAGGCTGGCATAGAGAAGAAAACTGCAAAGTTAAAGGGGAGTGAGAAGGC
TGTGGTTGCAAGGCATGAAGCTGGTCACGCAGTAGTAGGCACTGCAGTTG
CAAGTCTTCTTCCTGGACAGCCACGTGTCGAGAAACTAAGCATATTGCCA
AGGACAGGAGGGGCACTGGGATTTACTTATACTCCAGCAAATGAGGATAG
ATATCTGCTGTTCATTGATGAGTTATGTGGTCGCCTGGTTACTCTACTTG
GAGGACGTGCAGCAGAAGAAGTTGCTTATTCCGGTCGTATTTCCACTGGT
GCTCTTGATGACATACGGCGAGCAACCGACATGGCGTACAAGGCAATAGC
TGAATATGGTCTTAATCGGACAATAGGCCCTGTGTCTATAGCCACACTTT
CGAGTGGTGGGATTGATGAATCTGGGGGAGGTGTTCCATGGGGAAGAGAT
CAGGGGCAGCTAGTTGACCTTGTACAAAGGGAGGTGAAAGCATTATTGCA
ATCAGCCCTGGAAGTAGCACTCTGTGTTGTTCGTGCTAATCCTGATGTTT
TGGAGGGGCTTGGTGCCTGTCTGGAAGAAAAAGAGAAAGTAGAAGGGGAA
GAGCTGCAAGAATGGTTGGGAATGGTGGTTGCGCCTATAGAACTCTCGAA
CTTTGTTGCTGGCAGACAAGAGGTTCTTCCCCCCTGTACAAGGATCTCTC
CTCCCACTCCAAGGAAGCTCTGGGTAACAATTACTGTTCACTGCTCTACT
CCACATTGAAGCAAAGAGAGCTATCTTACTGCTC
back to top