CN189313

Overview
NameCN189313
Unique NameCN189313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH1_ORYSJ (Cell division protease ftsH homolog 1, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.616e-16
Identity = 64/191 (33.51%), Postives = 101/191 (52.88%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRY---LLFIDELCGRLVTLLGGRAAEEVAY-SGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQ-LVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            AG EKK A +   ++ +VA HEAGHA+VG    +L+P    V K+SI+PR G A G T+   +E+R    L     L  ++   LGGR AEEV +    ++TGA +D  + + +A + +  +G ++ IG V+I     GG    G  +   +D      D+V  EV+ L++ A   A  ++  + D+L  L
Sbjct:  474 AGPEKKNAVVSEEKRRLVAYHEAGHALVG----ALMPEYDPVAKISIIPR-GQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIG--GPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVEKAYSRATQIITTHIDILHKL 657          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: AFG3_YEAST (Mitochondrial respiratory chain complexes assembly protein AFG3 OS=Saccharomyces cerevisiae GN=AFG3 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.616e-16
Identity = 63/189 (33.33%), Postives = 99/189 (52.38%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFT-YTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGV----PWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLE 555
            AG+EKKT  L   EK  VA HEAGHAV G  +    P    + K+SI+PR  GALG+  Y P   D+YL+  ++   R++  LGGR +EE+ +   +++GA DD ++ T MA   +   G++  IG +S         D++ G      P+     + +DL   EVK+++  A      ++  N D ++
Sbjct:  538 AGLEKKTRVLSKEEKRSVAYHEAGHAVCGWFLKYADP----LLKVSIIPRGQGALGYAQYLP--PDQYLISEEQFRHRMIMALGGRVSEELHFPS-VTSGAHDDFKKVTQMANAMVTSLGMSPKIGYLS--------FDQNDGNFKVNKPFSNKTARTIDL---EVKSIVDDAHRACTELLTKNLDKVD 708          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_TOBAC (Cell division protease ftsH homolog, chloroplastic OS=Nicotiana tabacum GN=FTSH PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.168e-16
Identity = 65/191 (34.03%), Postives = 100/191 (52.36%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRY---LLFIDELCGRLVTLLGGRAAEEVAY-SGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQ-LVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            AG EKK A +   +K +VA HEAGHA+VG    +L+P    V K+SI+PR G A G T+   +E+R    L     L  ++   LG R AEEV +    ++TGA +D  + + +A + +   G ++ IG V+I     GG    G  +   +D      D+V  EV+ L++ A E A  ++  + D+L  L
Sbjct:  495 AGPEKKNAVVSDEKKKLVAYHEAGHALVG----ALMPEYDPVAKISIIPR-GQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGERVAEEVIFGQDNVTTGASNDFMQVSRVARQMVERLGFSKKIGQVAIG--GGGGNPFLGQQMSTQKDYSMATADVVDAEVRELVERAYERATEIITTHIDILHKL 678          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ftsH PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.168e-16
Identity = 59/193 (30.57%), Postives = 96/193 (49.74%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAY-SGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRD-------QGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            G E+++  +   +K   A HEAGH ++G     L+P      K++I+PR G ALG T+     D   +   +L  ++ TL GGR AEE+ Y S  +STGA +DI+ AT++A   + ++G +  +GP+  A        E  G V  GR          +   ++  EVK L++     A  ++  N D+L  +
Sbjct:  395 GSERRSMVMSDFQKESTAYHEAGHVIIGR----LVPDHDPAHKVTIIPR-GQALGITFFLPESDILSISRQKLESQISTLYGGRLAEEIIYGSQNVSTGAFNDIKVATNLARNMVTQWGFSDKLGPLLYA--------EEEGEVFLGRSVAKAKHMSDETARIIDEEVKLLIEVNYNRARKILNENLDILHAM 574          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAI (Cell division protease ftsH OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ftsH PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.168e-16
Identity = 57/193 (29.53%), Postives = 95/193 (49.22%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGR-ISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRD-------QGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            G E+++  +   +K   A HEAGH ++G     L+P      K++I+PR G ALG T+     D   +   +L  ++ TL GGR AEE+ Y  + +STGA +DI+ AT +A   + ++G +  +GP+  A        E  G +  GR          +   ++  EVK L++     A  ++  N D+L  +
Sbjct:  395 GSERRSMVMSDFQKESTAYHEAGHVIIGR----LVPDHDPAHKVTIIPR-GRALGVTFFLPESDTLSISRQKLESQISTLYGGRLAEEIIYGAKNVSTGAYNDIKIATSLAKNMVTQWGFSEKLGPLLYA--------EEEGEIFLGRSVAKAKHMSDETARIIDEEVKLLIEINYSRARNILNENIDILHAM 574          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: YME1_SCHPO (Protein YME1 homolog OS=Schizosaccharomyces pombe GN=SPCC965.04c PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.374e-15
Identity = 60/186 (32.26%), Postives = 101/186 (54.30%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            G E+K+A +    K + A HE GHA+V     + +    R  K +I+PR G +LG T +  + D+     +E    L   +GGRAAEE+ Y   +I++GA +DI +AT +A + + E+G++  IGPVS+         E     P  R       LV+ E+K+LL+++ E +L +++++   L+ L
Sbjct:  511 GAERKSAFITPENKLMTAYHEGGHALVALFTKNAM----RPYKATIMPR-GSSLGMTISLPDMDKDSWTREEYLAMLDVTMGGRAAEELLYGKDKITSGAHNDIDKATQVARRMVTEFGMSDRIGPVSLEA-------EMDNLSPATR------ALVESEIKSLLEASYERSLSLLKSHKKELDAL 678          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_BUCBP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ftsH PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.795e-15
Identity = 57/193 (29.53%), Postives = 98/193 (50.78%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRD-------QGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            G E+++  +   +K   A HEAGH +VG     L+P      K++I+PR G ALG T+    +D   +  ++L  ++ TL GGR AEE+ Y    +STGA +DI+ AT++A   + ++G ++ +GP+  +        E  G +  GR          +   ++  EVK L++     A  ++  N D+L  +
Sbjct:  395 GSERRSMVMTEKQKESTAYHEAGHVIVGR----LVPEHDPAHKVTIIPR-GRALGVTFFLPKDDVLSINKNKLESQISTLYGGRLAEEIIYGVNNVSTGAHNDIKVATNLARNMVTQWGFSKKLGPLLYS--------EEEGEIFLGRTVTKSKHMSDETARIIDEEVKLLVEKNYNRAKKILEENLDILHAM 574          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH8_ORYSJ (Cell division protease ftsH homolog 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.795e-15
Identity = 53/134 (39.55%), Postives = 73/134 (54.48%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSG 408
            G+EKK   +   E+  VA HE+GHAV G  +    P    + K++I+PR   ALGF     NE+  L+  ++L       LGGRAAEEV   GRISTGA +D+ + T M Y  +A YG +  +G +S      G
Sbjct:  581 GLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEP----LLKVTIVPRGTAALGFAQYVPNEN-LLMTKEQLFDMTCMTLGGRAAEEVLI-GRISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSFPQRDDG 708          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: RCA1_YEAST (Mitochondrial respiratory chain complexes assembly protein RCA1 OS=Saccharomyces cerevisiae GN=RCA1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.344e-15
Identity = 57/155 (36.77%), Postives = 85/155 (54.84%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFT-YTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVD 468
            G+E+K+  L   EK VVA HEAGHAV G  +    P    + K+SI+PR  GALG+  Y P   D +LL   +L  R+   LGGR +EE+ +   +++GA DD ++ T MA   + E G++  IG V+         D+S    P+  + G ++D
Sbjct:  594 GVERKSKLLSPEEKKVVAYHEAGHAVCGWYLKYADP----LLKVSIIPRGQGALGYAQYLPG--DIFLLTEQQLKDRMTMSLGGRVSEELHFPS-VTSGASDDFKKVTSMATAMVTELGMSDKIGWVNYQKR-----DDSDLTKPFSDETGDIID 736          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH3_ORYSJ (Cell division protease ftsH homolog 3, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH3 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.344e-15
Identity = 60/181 (33.15%), Postives = 90/181 (49.72%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFT-YTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPD 546
            G+EKK   +   E+  VA HE+GHAV G  +    P    + K++I+PR   ALGF  Y P   D  L+  ++L       LGGRAAEEV   G+ISTGA +D+ + T M Y  +A YG +  +G +S      G         P+     Q   ++  EV+  +  A E  + +++ + D
Sbjct:  566 GLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEP----LLKVTIVPRGTAALGFAQYVP--NDNLLMTKEQLFDMTCMTLGGRAAEEVLI-GKISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSFPQREDG----FEMSKPY---SSQTASIIDTEVREWVAKAYEKTVELIKQHKD 732          
The following BLAST results are available for this feature:
BLAST of CN189313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
FTSH1_ORYSJ3.616e-1633.51Cell division protease ftsH homolog 1, chloroplast... [more]
AFG3_YEAST3.616e-1633.33Mitochondrial respiratory chain complexes assembly... [more]
FTSH_TOBAC6.168e-1634.03Cell division protease ftsH homolog, chloroplastic... [more]
FTSH_BUCAP6.168e-1630.57Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH_BUCAI6.168e-1629.53Cell division protease ftsH OS=Buchnera aphidicola... [more]
YME1_SCHPO1.374e-1532.26Protein YME1 homolog OS=Schizosaccharomyces pombe ... [more]
FTSH_BUCBP1.795e-1529.53Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH8_ORYSJ1.795e-1539.55Cell division protease ftsH homolog 8, mitochondri... [more]
RCA1_YEAST2.344e-1536.77Mitochondrial respiratory chain complexes assembly... [more]
FTSH3_ORYSJ2.344e-1533.15Cell division protease ftsH homolog 3, mitochondri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189313 ID=CN189313; Name=CN189313; organism=Citrus sinensis; type=EST; length=784bp
GAGGCTGGCATAGAGAAGAAAACTGCAAAGTTAAAGGGGAGTGAGAAGGC
TGTGGTTGCAAGGCATGAAGCTGGTCACGCAGTAGTAGGCACTGCAGTTG
CAAGTCTTCTTCCTGGACAGCCACGTGTCGAGAAACTAAGCATATTGCCA
AGGACAGGAGGGGCACTGGGATTTACTTATACTCCAGCAAATGAGGATAG
ATATCTGCTGTTCATTGATGAGTTATGTGGTCGCCTGGTTACTCTACTTG
GAGGACGTGCAGCAGAAGAAGTTGCTTATTCCGGTCGTATTTCCACTGGT
GCTCTTGATGACATACGGCGAGCAACCGACATGGCGTACAAGGCAATAGC
TGAATATGGTCTTAATCGGACAATAGGCCCTGTGTCTATAGCCACACTTT
CGAGTGGTGGGATTGATGAATCTGGGGGAGGTGTTCCATGGGGAAGAGAT
CAGGGGCAGCTAGTTGACCTTGTACAAAGGGAGGTGAAAGCATTATTGCA
ATCAGCCCTGGAAGTAGCACTCTGTGTTGTTCGTGCTAATCCTGATGTTT
TGGAGGGGCTTGGTGCCTGTCTGGAAGAAAAAGAGAAAGTAGAAGGGGAA
GAGCTGCAAGAATGGTTGGGAATGGTGGTTGCGCCTATAGAACTCTCGAA
CTTTGTTGCTGGCAGACAAGAGGTTCTTCCCCCCTGTACAAGGATCTCTC
CTCCCACTCCAAGGAAGCTCTGGGTAACAATTACTGTTCACTGCTCTACT
CCACATTGAAGCAAAGAGAGCTATCTTACTGCTC
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