CN189313

Overview
NameCN189313
Unique NameCN189313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_CYAME (Cell division protease ftsH homolog OS=Cyanidioschyzon merolae GN=ftsH PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.061e-15
Identity = 57/192 (29.69%), Postives = 109/192 (56.77%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAY-SGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRD-------QGQLVDLVQREVKALLQSALEVALCVVRANPDVLE 555
            AG+E  T  + G  K ++A HE GHA+  T    LLP  P V+K++++PR   A G T+   + +R LL   +L   ++  LGGRAAEE  + +  ++TGA +D+++ T++A + +  +G++ ++GP+ + T    G +E    +  GRD         +++  +  +V+ ++++  E  L +++AN  V++
Sbjct:  396 AGMEG-TPIMDGKIKRLIAYHETGHALTAT----LLPNHPPVQKVTLIPRRQ-AKGLTWFMQDNERDLLSKSQLMSMIMVALGGRAAEEAVFGNAEVTTGASNDLQQVTNLARQMVTRFGMS-SLGPLCLET----GNEE----IFLGRDMRLMPEVSEEVIAQIDAQVRGMIEACYEKVLELMQANRVVMD 572          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH3_ARATH (Cell division protease ftsH homolog 3, mitochondrial OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.061e-15
Identity = 61/169 (36.09%), Postives = 88/169 (52.07%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALE 513
            G+EKK   +   E+  VA HE+GHAVVG  +    P    + K++I+PR   ALGF     NE+  L+  ++L       LGGRAAE+V   G+ISTGA +D+ + T M Y  +A YG +  +G +S       G D S    P+    G ++D    EV+  +  A E
Sbjct:  567 GLEKKNRVISKLERRTVAYHESGHAVVGWFLEHAEP----LLKVTIVPRGTAALGFAQYVPNEN-LLMTKEQLFDMTCMTLGGRAAEQVLI-GKISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPP-RDDGYDFS---KPYSNKTGAIID---EEVRDWVAKAYE 722          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: RCA1_SCHPO (Mitochondrial respiratory chain complexes assembly protein rca1 OS=Schizosaccharomyces pombe GN=SPBC543.09 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.998e-15
Identity = 56/172 (32.56%), Postives = 97/172 (56.40%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGF-TYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALE 513
            AG+EKK+  L   EK  VA HEAGHAV G  +  + P    + K+SI+PR   ALG+ +Y P  +D+YL+   ++  ++   L GR +EE+ +   +I++GA DD ++ T MA   + +YG++ T+G ++    +   + +     P+     Q++D    E++ L++ A E
Sbjct:  541 AGLEKKSRVLSPEEKNTVAHHEAGHAVAGWFMEYVDP----LLKVSIIPR-AQALGYASYLP--KDQYLMSRGQILDQMGMALAGRVSEEIFFGPEKITSGASDDFQKVTRMAQAYVTQYGMSPTVGTIAYPIDTRETVQK-----PFSEATAQMID---EEIRKLVKHAYE 697          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSHA_ARATH (Cell division protease ftsH homolog 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.222e-15
Identity = 58/159 (36.48%), Postives = 81/159 (50.94%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQRE 483
            G+EKK   +   E+  VA HE+GHAV G  +    P    + K++I+PR   ALGF     NE+  L+  ++L       LGGRAAE+V   GRISTGA +D+ + T M Y  +A YG +  IG +S          E     P+    G ++D   RE
Sbjct:  573 GLEKKNRVISKLERRTVAYHESGHAVAGWFLEHAEP----LLKVTIVPRGTAALGFAQYVPNEN-LLMTKEQLFDMTCMTLGGRAAEQVLI-GRISTGAQNDLEKVTKMTYAQVAVYGFSDKIGLLSFPQ------REDEFSKPYSNRTGAMIDEEVRE 719          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.820e-15
Identity = 62/188 (32.98%), Postives = 99/188 (52.66%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFT-YTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAY-SGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            AG+E  T+   G  K +VA HE GHAV  T  A    G   V+K++++PR G A G T + P  ED  L+   ++   +V  LGGRAAEEV +    ++TGA  D+++ T +A + +  +G++  IGP ++A  ++ G D     +       +L   +   V+ ++  A EVA   VR N   ++ L
Sbjct:  464 AGLEG-TSMTDGKSKMLVAYHEIGHAVCATLTA----GHDEVQKVTLIPR-GQARGLTWFLPGEEDPALVSRQQIFAGIVGGLGGRAAEEVVFGEPEVTTGAAGDLQQVTRVARRMVTAFGMSE-IGPWALAEPAAQGGDVVLRMLARSSMSERLAADIDAAVRTIVDEAYEVAKAHVRRNRAAIDQL 644          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH6_ARATH (Cell division protease ftsH homolog 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.163e-14
Identity = 62/187 (33.16%), Postives = 100/187 (53.48%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAY-SGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            AG+E  T  + G  KA+VA HE GHA+  T    L  G   V+K++++PR G A G T+    ED  L+   +L  R+V  LGGRAAE+V +    I+TGA  D+++ T++A + +  +G++  IGP ++   +    D     +       +L + +   VK ++  A EVA   VR N + ++ L
Sbjct:  466 AGMEG-TKMIDGKSKAIVAYHEVGHAICAT----LTEGHDPVQKVTLVPR-GQARGLTWFLPGEDPTLVSKQQLFARIVGGLGGRAAEDVIFGEPEITTGAAGDLQQVTEIARQMVTMFGMSE-IGPWALTDPAVKQNDVVLRMLARNSMSEKLAEDIDSCVKKIIGDAYEVAKKHVRNNREAIDKL 645          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH2_HAEIN (Cell division protease ftsH homolog 2 OS=Haemophilus influenzae GN=ftsH-B PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.163e-14
Identity = 60/193 (31.09%), Postives = 96/193 (49.74%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGR-ISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDL-------VQREVKALLQSALEVALCVVRANPDVLEGL 561
            G E++T  +   +K   A HEAGHA+VG     L+P    V K++I+PR G ALG T+     D+  +   +L  +L TL  GR AE++ Y    ISTGA +DI+ AT++A   + ++G +  +GP+           E  G V  GR   +   +       +  EV+A++      A  ++  N D+L  +
Sbjct:  140 GPERRTMIMTDKQKESTAYHEAGHAIVGY----LVPEHDPVHKVTIIPR-GRALGVTFFLPEGDQISISQKQLESKLSTLYAGRLAEDLIYGEENISTGASNDIKVATNIARNMVTQWGFSEKLGPILYT--------EDEGEVFLGRSMAKAKHMSDETAHSIDEEVRAIVNRNYARAREILIDNMDILHAM 319          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH1_HAEIN (Cell division protease ftsH homolog 1 OS=Haemophilus influenzae GN=ftsH-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.163e-14
Identity = 60/193 (31.09%), Postives = 96/193 (49.74%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGR-ISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDL-------VQREVKALLQSALEVALCVVRANPDVLEGL 561
            G E++T  +   +K   A HEAGHA+VG     L+P    V K++I+PR G ALG T+     D+  +   +L  +L TL  GR AE++ Y    ISTGA +DI+ AT++A   + ++G +  +GP+           E  G V  GR   +   +       +  EV+A++      A  ++  N D+L  +
Sbjct:  394 GPERRTMIMTDKQKESTAYHEAGHAIVGY----LVPEHDPVHKVTIIPR-GRALGVTFFLPEGDQISISQKQLESKLSTLYAGRLAEDLIYGEENISTGASNDIKVATNIARNMVTQWGFSEKLGPILYT--------EDEGEVFLGRSMAKAKHMSDETAHSIDEEVRAIVNRNYARAREILIDNMDILHAM 573          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_CYACA (Cell division protease ftsH homolog OS=Cyanidium caldarium GN=ftsH PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.591e-14
Identity = 57/199 (28.64%), Postives = 105/199 (52.76%), Query Frame = 1
Query:    1 EAGIEKKTAKLKGSE------KAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRD-------QGQLVDLVQREVKALLQSALEVALCVVRANPDVLE 555
            E  I+K  A L+GS       K ++A HEAGHAV  T     LP    V+K++++PR   A G T+   N+D++L+   ++  +++  L GRA EE+ +    ++ GA +DI++ T MA + + ++G+++ +GP+         ++ S   V  GRD         ++V  V  EV+++L+     A  ++  N  +++
Sbjct:  405 EDSIDKIIAGLEGSPLADSRIKRLIAYHEAGHAVAAT----FLPHHDPVQKVTLIPRRQ-AKGLTWFLPNDDQFLVSKSQILSKIIAALAGRAMEEIVFGLPEVTIGAANDIKQVTFMARQMVTKFGMSK-VGPIC--------LENSSSEVFIGRDLMGRHELSEEMVAKVDLEVRSILKDCYIQARTILSQNRKLID 589          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_RICCN (Cell division protease ftsH homolog OS=Rickettsia conorii GN=ftsH PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.773e-14
Identity = 54/186 (29.03%), Postives = 91/186 (48.92%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            G+ +++  +   EK + A HE GHA+VG    +  P    + K +I+PR G ALG        D Y    +++   +   + GR AEE+ +   ++++GA  DI+ AT++A   + + GL+  IGP+     SSG  D+  G  P         +L+  EVK ++    E A  ++  + D L  L
Sbjct:  398 GVARRSIAMSEKEKRLTAYHEGGHALVGLYCPAASP----IHKATIIPR-GNALGMVQRLPETDEYSQNREQMESSIAVYMAGRVAEEIIFGRNKVTSGASSDIKGATNIARAMVTKAGLSDLIGPIFHG--SSG--DDMYGRQPNNETSEATAELIDAEVKRIITQGYEFAKDILTKHIDQLHTL 574          
The following BLAST results are available for this feature:
BLAST of CN189313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
FTSH_CYAME3.061e-1529.69Cell division protease ftsH homolog OS=Cyanidiosch... [more]
FTSH3_ARATH3.061e-1536.09Cell division protease ftsH homolog 3, mitochondri... [more]
RCA1_SCHPO3.998e-1532.56Mitochondrial respiratory chain complexes assembly... [more]
FTSHA_ARATH5.222e-1536.48Cell division protease ftsH homolog 10, mitochondr... [more]
FTSH6_ORYSJ6.820e-1532.98Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH6_ARATH1.163e-1433.16Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH2_HAEIN1.163e-1431.09Cell division protease ftsH homolog 2 OS=Haemophil... [more]
FTSH1_HAEIN1.163e-1431.09Cell division protease ftsH homolog 1 OS=Haemophil... [more]
FTSH_CYACA2.591e-1428.64Cell division protease ftsH homolog OS=Cyanidium c... [more]
FTSH_RICCN5.773e-1429.03Cell division protease ftsH homolog OS=Rickettsia ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189313 ID=CN189313; Name=CN189313; organism=Citrus sinensis; type=EST; length=784bp
GAGGCTGGCATAGAGAAGAAAACTGCAAAGTTAAAGGGGAGTGAGAAGGC
TGTGGTTGCAAGGCATGAAGCTGGTCACGCAGTAGTAGGCACTGCAGTTG
CAAGTCTTCTTCCTGGACAGCCACGTGTCGAGAAACTAAGCATATTGCCA
AGGACAGGAGGGGCACTGGGATTTACTTATACTCCAGCAAATGAGGATAG
ATATCTGCTGTTCATTGATGAGTTATGTGGTCGCCTGGTTACTCTACTTG
GAGGACGTGCAGCAGAAGAAGTTGCTTATTCCGGTCGTATTTCCACTGGT
GCTCTTGATGACATACGGCGAGCAACCGACATGGCGTACAAGGCAATAGC
TGAATATGGTCTTAATCGGACAATAGGCCCTGTGTCTATAGCCACACTTT
CGAGTGGTGGGATTGATGAATCTGGGGGAGGTGTTCCATGGGGAAGAGAT
CAGGGGCAGCTAGTTGACCTTGTACAAAGGGAGGTGAAAGCATTATTGCA
ATCAGCCCTGGAAGTAGCACTCTGTGTTGTTCGTGCTAATCCTGATGTTT
TGGAGGGGCTTGGTGCCTGTCTGGAAGAAAAAGAGAAAGTAGAAGGGGAA
GAGCTGCAAGAATGGTTGGGAATGGTGGTTGCGCCTATAGAACTCTCGAA
CTTTGTTGCTGGCAGACAAGAGGTTCTTCCCCCCTGTACAAGGATCTCTC
CTCCCACTCCAAGGAAGCTCTGGGTAACAATTACTGTTCACTGCTCTACT
CCACATTGAAGCAAAGAGAGCTATCTTACTGCTC
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