CN189313

Overview
NameCN189313
Unique NameCN189313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPN (Cell division protease ftsH homolog OS=Mycoplasma pneumoniae GN=ftsH PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.773e-14
Identity = 62/188 (32.98%), Postives = 97/188 (51.60%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTY-TPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSG-RISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRD--QGQLVDLVQREVKALLQSALEVALCVVRANPDVLE 555
            AG  KK+  +  +++ +VA HEAGHA+VG  V S       V+K++I+PR G A G+T  TP + D  L    +L   + T +GGRAAEE  Y    I+TGA  D  +AT++A   + + G+++ +G V            S G VP G      Q    +  E+ A+++   + A  +++ N   LE
Sbjct:  470 AGPAKKSRVVSDADRKLVAYHEAGHALVGLHVHS----NDEVQKITIIPR-GQAGGYTLSTPKSGDLNLKRKSDLLAMIATAMGGRAAEEEIYGPLEITTGASSDFYKATNIARAMVTQLGMSK-LGQVQYV--------PSQGTVPPGTKLFSEQTAKDIDFEINAIIEEQYKKARTIIKTNRKELE 643          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_RICFE (Cell division protease ftsH homolog OS=Rickettsia felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.540e-14
Identity = 52/186 (27.96%), Postives = 90/186 (48.39%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            G+ +++  +   EK + A HE GHA+VG    +  P    + K +I+PR G ALG        D Y    +++   +   + GR AEE+ +   ++++GA  DI+ AT++A   + + GL+  IGP+   + S    D+  G  P         +L+  EVK ++    E A  ++  + D L  L
Sbjct:  398 GVARRSIAMSEKEKRLTAYHEGGHALVGLYCPAASP----LHKATIIPR-GNALGMVQRLPETDEYSQNREQMESSIAVYMAGRVAEEIIFGRNKVTSGASSDIKGATNIARAMVTKAGLSDLIGPIFHGSSS----DDMYGRQPSNETSEATAELIDAEVKKIITQGYEFAKDILTKHIDQLHTL 574          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_RICBR (Cell division protease ftsH homolog OS=Rickettsia bellii (strain RML369-C) GN=ftsH PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.286e-13
Identity = 50/183 (27.32%), Postives = 91/183 (49.73%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSG-RISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVL 552
            G+E+++  +   +K + A HE GHA+VG    +  P    + K +I+PR G ALG        DR+ +  D++   +   + GR AEE+ +   ++++GA  DI+ AT MA   + ++GL+  +GPV   + S                  +L+D    EVK ++ +  ++A  ++  + D L
Sbjct:  398 GVERRSMIMSDEQKKLTAYHEGGHALVGLYCLASDP----IHKATIIPR-GRALGMVMRLPENDRFSMPRDKMEADIAVAMAGRVAEEIIFGKEKVTSGASSDIKMATRMAKAMVTDWGLSDKVGPVYHGSASEDMYTNRNSSSDRSESTSELID---EEVKKIVTTGYDLAKDILTKHLDQL 572          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_MYCGE (Cell division protease ftsH homolog OS=Mycoplasma genitalium GN=ftsH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.336e-13
Identity = 59/188 (31.38%), Postives = 95/188 (50.53%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTY-TPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSG-RISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRD--QGQLVDLVQREVKALLQSALEVALCVVRANPDVLE 555
            AG  KK+  +   ++ +VA HEAGHA+VG  V S       V+K++I+PR G A G+T  TP + D  L    +L   + T +GGRAAEE  Y    I+TGA  D  +AT++A   + + G+++ +G V            S G +P        Q    +  E+  +++   + A  ++++N   LE
Sbjct:  473 AGPAKKSRVISDEDRKLVAYHEAGHALVGLHVHS----NDEVQKITIIPR-GQAGGYTLSTPKSGDLNLKRKSDLLAMIATAMGGRAAEEEIYGNLEITTGASSDFYKATNIARAMVTQLGMSK-LGQVQYV--------PSQGTLPSNVKLYSEQTAKDIDNEINFIIEEQYKKAKTIIKSNRKELE 646          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_RICPR (Cell division protease ftsH homolog OS=Rickettsia prowazekii GN=ftsH PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.089e-12
Identity = 50/186 (26.88%), Postives = 87/186 (46.77%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            G+ +++  +   EK + A HE GHA+VG    +  P    + K +I+PR G ALG        D Y    +++   +   + GR AEE+ +   ++++GA  DI+ AT++A   + + GL+  IGP+          D+  G            +L+  EVK ++    E A  ++  + D L  L
Sbjct:  398 GVVRRSIAMSEKEKRLTAYHEGGHALVGLYCPAASP----IHKATIIPR-GNALGMVQRLPETDEYSQNREQMESSIAVYMAGRVAEEIIFGRNKVTSGASSDIKGATNIARAMVTKAGLSDLIGPI----FHGSNSDDMYGRQSSNEISEATAELIDAEVKRIITQGYEFAKDILTKHIDQLHTL 574          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_RICTY (Cell division protease ftsH homolog OS=Rickettsia typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.422e-12
Identity = 51/186 (27.42%), Postives = 88/186 (47.31%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            G+ +++  +   EK + A HE GHA+VG    +  P    + K +I+PR G ALG        D Y    +++   +   + GR AEE+ +   ++++GA  DI+ AT++A   + + GL+  IGP+   + S    D+  G             L+  EVK ++    E A  ++  + D L  L
Sbjct:  398 GVVRRSIAMSEKEKRLTAYHEGGHALVGLYCPAASP----IHKATIIPR-GNALGMVQRLPETDEYSQNREQMESSIAVYMAGRVAEEIIFGKNKVTSGAASDIKGATNIARAMVTKAGLSDLIGPIFHGSSS----DDMYGRQQSNEISEATAKLIDAEVKKIITQGYEFAKDILTKHIDQLHTL 574          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSHB_ARATH (Cell division protease ftsH homolog 11, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=FTSH11 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.857e-12
Identity = 45/129 (34.88%), Postives = 68/129 (52.71%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSI 390
            G E+KT  +    K + A HE+GHA+V        P    + K +I+PR G ALG      + D   +   +L  RL   +GGR AEE+ +    I+TGA  D+ +AT++A   ++  G++  IGPV I
Sbjct:  601 GTERKTMFVSEDSKKLTAYHESGHAIVALNTKGAHP----IHKATIMPR-GSALGMVTQLPSNDETSVSKRQLLARLDVCMGGRVAEELIFGLDHITTGASSDLSQATELAQYMVSSCGMSEAIGPVHI 724          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH4_ARATH (Cell division protease ftsH homolog 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.057e-12
Identity = 50/176 (28.41%), Postives = 89/176 (50.57%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAY-SGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVV 531
            G E+K+A +    + + A HE GHA+V       LP    V K +I+PR G ALG      ++D   +   ++  RL   +GGR AEE+ +    +++GA  D+ +AT +A   + ++G+++ +G      L +   D++G  +       +   L++ EVK LL+ A   A  ++
Sbjct:  467 GSERKSAVISDESRKLTAFHEGGHALVAIHTEGALP----VHKATIVPR-GMALGMVSQLPDKDETSISRKQMLARLDVCMGGRVAEELIFGESEVTSGASSDLEQATKLARAMVTKFGMSKEVG------LVAHNYDDNGKSM-----STETRLLIESEVKQLLEKAYNNAKTIL 626          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: YME1_YEAST (Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.572e-11
Identity = 52/172 (30.23%), Postives = 82/172 (47.67%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVA 519
            G E+KT  L  + +   A HEAGHA++    A    G   + K +ILPR G ALG T+     D+  +   E   RL   +GG+ AEE+ Y     ++G   D++ AT  A   + +YG++  +GPV+++               W     ++ D+   EV  LL+ + E A
Sbjct:  521 GAERKTMVLTDAARKATAFHEAGHAIM----AKYTNGATPLYKATILPR-GRALGITFQLPEMDKVDITKRECQARLDVCMGGKIAEELIYGKDNTTSGCGSDLQSATGTARAMVTQYGMSDDVGPVNLSE-------------NWESWSNKIRDIADNEVIELLKDSEERA 674          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTU (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis GN=ftsH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 58/193 (30.05%), Postives = 91/193 (47.15%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPW-GRDQGQLVDL-------VQREVKALLQSALEVALCVVRANPDVLEGL 561
            G  +K   +   EK + A HE GH +   A+  + P    + K++IL R G   G       ED+ L    E+  +LV  +GGRAAEE+ +    +TGA+ DI +AT +A   + E+G++  +G V            S  G P+ GR  G   D        +  EV+ L+++A   A  ++    DVL+ L
Sbjct:  406 GPRRKGRIISEQEKKITAYHEGGHTLAAWAMPDIEP----IYKVTILAR-GRTGGHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFR-EPTTGAVSDIEQATKIARSMVTEFGMSSKLGAVKYG---------SEHGDPFLGRTMGTQPDYSHEVAREIDEEVRKLIEAAHTEAWEILTEYRDVLDTL 583          
The following BLAST results are available for this feature:
BLAST of CN189313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
FTSH_MYCPN5.773e-1432.98Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH_RICFE7.540e-1427.96Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICBR1.286e-1327.32Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_MYCGE8.336e-1331.38Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH_RICPR1.089e-1226.88Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICTY1.422e-1227.42Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSHB_ARATH1.857e-1234.88Cell division protease ftsH homolog 11, chloroplas... [more]
FTSH4_ARATH7.057e-1228.41Cell division protease ftsH homolog 4, mitochondri... [more]
YME1_YEAST1.572e-1130.23Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 P... [more]
FTSH_MYCTU2.053e-1130.05Cell division protease ftsH homolog OS=Mycobacteri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189313 ID=CN189313; Name=CN189313; organism=Citrus sinensis; type=EST; length=784bp
GAGGCTGGCATAGAGAAGAAAACTGCAAAGTTAAAGGGGAGTGAGAAGGC
TGTGGTTGCAAGGCATGAAGCTGGTCACGCAGTAGTAGGCACTGCAGTTG
CAAGTCTTCTTCCTGGACAGCCACGTGTCGAGAAACTAAGCATATTGCCA
AGGACAGGAGGGGCACTGGGATTTACTTATACTCCAGCAAATGAGGATAG
ATATCTGCTGTTCATTGATGAGTTATGTGGTCGCCTGGTTACTCTACTTG
GAGGACGTGCAGCAGAAGAAGTTGCTTATTCCGGTCGTATTTCCACTGGT
GCTCTTGATGACATACGGCGAGCAACCGACATGGCGTACAAGGCAATAGC
TGAATATGGTCTTAATCGGACAATAGGCCCTGTGTCTATAGCCACACTTT
CGAGTGGTGGGATTGATGAATCTGGGGGAGGTGTTCCATGGGGAAGAGAT
CAGGGGCAGCTAGTTGACCTTGTACAAAGGGAGGTGAAAGCATTATTGCA
ATCAGCCCTGGAAGTAGCACTCTGTGTTGTTCGTGCTAATCCTGATGTTT
TGGAGGGGCTTGGTGCCTGTCTGGAAGAAAAAGAGAAAGTAGAAGGGGAA
GAGCTGCAAGAATGGTTGGGAATGGTGGTTGCGCCTATAGAACTCTCGAA
CTTTGTTGCTGGCAGACAAGAGGTTCTTCCCCCCTGTACAAGGATCTCTC
CTCCCACTCCAAGGAAGCTCTGGGTAACAATTACTGTTCACTGCTCTACT
CCACATTGAAGCAAAGAGAGCTATCTTACTGCTC
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