CN189313

Overview
NameCN189313
Unique NameCN189313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2724 contig Csv1_Contig2724:1..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTA (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ftsH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 58/193 (30.05%), Postives = 91/193 (47.15%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPW-GRDQGQLVDL-------VQREVKALLQSALEVALCVVRANPDVLEGL 561
            G  +K   +   EK + A HE GH +   A+  + P    + K++IL R G   G       ED+ L    E+  +LV  +GGRAAEE+ +    +TGA+ DI +AT +A   + E+G++  +G V            S  G P+ GR  G   D        +  EV+ L+++A   A  ++    DVL+ L
Sbjct:  406 GPRRKGRIISEQEKKITAYHEGGHTLAAWAMPDIEP----IYKVTILAR-GRTGGHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFR-EPTTGAVSDIEQATKIARSMVTEFGMSSKLGAVKYG---------SEHGDPFLGRTMGTQPDYSHEVAREIDEEVRKLIEAAHTEAWEILTEYRDVLDTL 583          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_MYCLE (Cell division protease ftsH homolog OS=Mycobacterium leprae GN=ftsH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 58/193 (30.05%), Postives = 91/193 (47.15%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPW-GRDQGQLVDL-------VQREVKALLQSALEVALCVVRANPDVLEGL 561
            G  +K   +   EK + A HE GH +   A+  + P    + K++IL R G   G       ED+ L    E+  +LV  +GGRAAEE+ +    +TGA+ DI +AT +A   + E+G++  +G V            S  G P+ GR  G   D        +  EV+ L+++A   A  ++    DVL+ L
Sbjct:  406 GPRRKGRIISEQEKKITAYHEGGHTLAAWAMPDIEP----IYKVTILAR-GRTGGHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFR-EPTTGAVSDIEKATKIARSMVTEFGMSSKLGAVRYG---------SEHGDPFLGRTMGTQADYSHEVARDIDDEVRKLIEAAHTEAWEILTEYRDVLDTL 583          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_MYCBO (Cell division protease ftsH homolog OS=Mycobacterium bovis GN=ftsH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 58/193 (30.05%), Postives = 91/193 (47.15%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPW-GRDQGQLVDL-------VQREVKALLQSALEVALCVVRANPDVLEGL 561
            G  +K   +   EK + A HE GH +   A+  + P    + K++IL R G   G       ED+ L    E+  +LV  +GGRAAEE+ +    +TGA+ DI +AT +A   + E+G++  +G V            S  G P+ GR  G   D        +  EV+ L+++A   A  ++    DVL+ L
Sbjct:  406 GPRRKGRIISEQEKKITAYHEGGHTLAAWAMPDIEP----IYKVTILAR-GRTGGHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFR-EPTTGAVSDIEQATKIARSMVTEFGMSSKLGAVKYG---------SEHGDPFLGRTMGTQPDYSHEVAREIDEEVRKLIEAAHTEAWEILTEYRDVLDTL 583          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_LACLA (Cell division protease ftsH homolog OS=Lactococcus lactis subsp. lactis GN=ftsH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.682e-11
Identity = 57/179 (31.84%), Postives = 87/179 (48.60%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQ-------LVDLVQREVKALLQSALEVA 519
            AG  KK       E+ +VA HEAGHA+VG     +L     V K++++PR G   G+     +E+        L  +L +L+GGR  EE+ + G  + GA +DI +AT +A   + EYG+++ +G VS          E    V  GRD GQ          ++  EV+ +L  A + A
Sbjct:  436 AGPAKKDRIQSMREREIVAYHEAGHAIVGL----VLENGSTVRKVTVVPR-GRIGGYMLALPDEEIMQPTNFHLQDQLASLMGGRLGEEIVF-GVATPGASNDIEKATHIARSMVTEYGMSKKLGMVSY---------EGDHQVFIGRDYGQTKTYSEATAVMIDDEVRRILGEAYDRA 599          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.502e-11
Identity = 51/165 (30.91%), Postives = 77/165 (46.67%), Query Frame = 1
Query:   19 KTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSG-RISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSAL 510
            K   L      V A HEAGHA+V    A  +P    + K++I+PR G A G T     +D   +   +L  +L  L+GGR  EE+ +   +++ GA DD R+AT +A   +  +G +  IGP  I       + E+              DL+ +EV  LL  +L
Sbjct:  410 KRRPLDDQTNRVSAFHEAGHALVALLTADSIP----LHKVTIIPR-GEAGGLTSFLQEKDISFMTRAQLLAQLDVLMGGRVGEELVFGADKVTNGAADDFRKATILAQNMVKRFGFSSKIGPRVIPDTQDEQLGEA------------TRDLIDKEVDQLLNDSL 557          
The following BLAST results are available for this feature:
BLAST of CN189313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
FTSH_MYCTA2.053e-1130.05Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCLE2.053e-1130.05Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCBO2.053e-1130.05Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_LACLA2.682e-1131.84Cell division protease ftsH homolog OS=Lactococcus... [more]
YME1_SCHMA3.502e-1130.91Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189313 ID=CN189313; Name=CN189313; organism=Citrus sinensis; type=EST; length=784bp
GAGGCTGGCATAGAGAAGAAAACTGCAAAGTTAAAGGGGAGTGAGAAGGC
TGTGGTTGCAAGGCATGAAGCTGGTCACGCAGTAGTAGGCACTGCAGTTG
CAAGTCTTCTTCCTGGACAGCCACGTGTCGAGAAACTAAGCATATTGCCA
AGGACAGGAGGGGCACTGGGATTTACTTATACTCCAGCAAATGAGGATAG
ATATCTGCTGTTCATTGATGAGTTATGTGGTCGCCTGGTTACTCTACTTG
GAGGACGTGCAGCAGAAGAAGTTGCTTATTCCGGTCGTATTTCCACTGGT
GCTCTTGATGACATACGGCGAGCAACCGACATGGCGTACAAGGCAATAGC
TGAATATGGTCTTAATCGGACAATAGGCCCTGTGTCTATAGCCACACTTT
CGAGTGGTGGGATTGATGAATCTGGGGGAGGTGTTCCATGGGGAAGAGAT
CAGGGGCAGCTAGTTGACCTTGTACAAAGGGAGGTGAAAGCATTATTGCA
ATCAGCCCTGGAAGTAGCACTCTGTGTTGTTCGTGCTAATCCTGATGTTT
TGGAGGGGCTTGGTGCCTGTCTGGAAGAAAAAGAGAAAGTAGAAGGGGAA
GAGCTGCAAGAATGGTTGGGAATGGTGGTTGCGCCTATAGAACTCTCGAA
CTTTGTTGCTGGCAGACAAGAGGTTCTTCCCCCCTGTACAAGGATCTCTC
CTCCCACTCCAAGGAAGCTCTGGGTAACAATTACTGTTCACTGCTCTACT
CCACATTGAAGCAAAGAGAGCTATCTTACTGCTC
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