CN189311

Overview
NameCN189311
Unique NameCN189311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL3_MOUSE (ADP-ribosylation factor-like protein 3 OS=Mus musculus GN=Arl3 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.047e-18
Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            YF+NT  LI+V+DS DR R  E   EL  +L E++L    +L+FANKQDL  A  A+EI + L LH++R R W IQS  A +GEG+ + ++W+  N+  K
Sbjct:   81 YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL3_HUMAN (ADP-ribosylation factor-like protein 3 OS=Homo sapiens GN=ARL3 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.047e-18
Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            YF+NT  LI+V+DS DR R  E   EL  +L E++L    +L+FANKQDL  A  A+EI + L LH++R R W IQS  A +GEG+ + ++W+  N+  K
Sbjct:   81 YFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL3_DANRE (ADP-ribosylation factor-like protein 3 OS=Danio rerio GN=arl3 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.047e-18
Identity = 46/100 (46.00%), Postives = 66/100 (66.00%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            YF+NT  LI+V+DS DR R  E   EL  +L+E++L    +LVFANKQDL  A  A+EI + L LH++R R W IQS  A +GEG+ + ++W+  ++  K
Sbjct:   81 YFENTDVLIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLVFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKSVNAK 180          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL5C_MOUSE (ADP-ribosylation factor-like protein 5C OS=Mus musculus GN=Arl5c PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.333e-18
Identity = 41/93 (44.09%), Postives = 65/93 (69.89%), Query Frame = -2
Query:  194 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWL 472
            Y+ N + +I V+DS DR+R+L  R+EL++ML  + L++A +L+FANKQD+ ++M  AEI+  L L +++   W+IQ  CA +GEGL   L W+
Sbjct:   80 YYSNAEFVILVIDSTDRNRLLTTREELYKMLAHEALQNASVLIFANKQDVKDSMTTAEISQFLTLSAIKDHPWHIQGCCALTGEGLPAGLQWM 172          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL3_CAEEL (ADP-ribosylation factor-like protein 3 OS=Caenorhabditis elegans GN=arl-3 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.333e-18
Identity = 44/97 (45.36%), Postives = 65/97 (67.01%), Query Frame = -2
Query:  182 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNI 472
            Y++N   LIFV+DSND+ R  E   EL  +L+E++LR   +L+FANKQDL  A ++ EIT KL L  LR R W+IQ+  A   EG+ + + W+++N+
Sbjct:   82 YYENIDTLIFVIDSNDKKRFDEMNIELGELLDEEKLRKVPVLIFANKQDLVTAASSEEITRKLNLDLLRDRTWHIQACSALKNEGINDGITWVASNL 178          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF3_YEAST (ADP-ribosylation factor 3 OS=Saccharomyces cerevisiae GN=ARF3 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 5.197e-18
Identity = 46/97 (47.42%), Postives = 68/97 (70.10%), Query Frame = -2
Query:  185 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-SLRQRHWYIQSTCATSGEGLYEVLDWLSNN 472
            YF  T  LIFV+DS+ R+R+ EA++EL+ ++ E E+ + VLLV+ANKQDL +AM   E++D L L  +L+ + W +  + A SG+GL E L W+SNN
Sbjct:   81 YFPATTALIFVIDSSARNRMEEAKEELYSIIGEKEMENVVLLVWANKQDLKDAMKPQEVSDFLELEKNLKNQPWCVIGSNALSGQGLVEGLSWISNN 177          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARFF_DICDI (ADP-ribosylation factor F OS=Dictyostelium discoideum GN=arrF PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.369e-17
Identity = 42/102 (41.18%), Postives = 65/102 (63.73%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRML--NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            Y Q T   IFV+DS DR+R  E + E+  ++  N++E  +A LL+FANKQD+ N +  AE+ + L L+SL  + W++Q   A  G+G+YE  DW+ +N + K
Sbjct:   89 YDQRTDVFIFVVDSTDRERFDEVKQEIKNIIEQNKNESSNASLLIFANKQDMLNPITPAELVNSLDLNSLTNKKWHVQPCSAVRGDGIYEGFDWIVSNSSGK 190          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL2_DROME (ADP-ribosylation factor-like protein 2 OS=Drosophila melanogaster GN=Arf84F PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 9.802e-17
Identity = 42/100 (42.00%), Postives = 60/100 (60.00%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            YF++T GL++V+DS DR R+     EL  +L E+ L  A LLV  NKQDLP A+++ EI + L L  +   HW +    A +GE L   +DWL  +IA +
Sbjct:   80 YFESTDGLVWVVDSADRMRLESCGQELQVLLQEERLAGATLLVLCNKQDLPGALSSNEIKEILHLEDITTHHWLVAGVSAVTGEKLLSSMDWLIADIAKR 179          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF5_ARATH (Probable ADP-ribosylation factor At2g18390 OS=Arabidopsis thaliana GN=At2g18390 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.865e-16
Identity = 43/101 (42.57%), Postives = 63/101 (62.38%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            YF+ T GL++V+DS+D  R+ + + EL  +L E+ L  + LL+ ANKQD+  A+   EI   L L S+ + RHW I    A +GEGL E  DWL  +IA++
Sbjct:   80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLAGSSLLILANKQDIQGALTPDEIGKVLNLESMDKSRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL6_CAEBR (ADP-ribosylation factor-like protein 6 OS=Caenorhabditis briggsae GN=arl-6 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.298e-16
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = -2
Query:  182 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNI 472
            YF ++QG+IFVLDS+DR R+   +DEL  +L+  ++  R   +++ ANK D+P AM  A+IT  LGL+  R   W I STCA +G+GL + +  LS+ I
Sbjct:   83 YFHSSQGVIFVLDSSDRVRMELLKDELWLVLDHKDVASRGIPVVILANKMDIPGAMTCADITAALGLNLHRSGTWSIHSTCALTGDGLDKAMQQLSSEI 181          
The following BLAST results are available for this feature:
BLAST of CN189311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
ARL3_MOUSE1.047e-1846.00ADP-ribosylation factor-like protein 3 OS=Mus musc... [more]
ARL3_HUMAN1.047e-1846.00ADP-ribosylation factor-like protein 3 OS=Homo sap... [more]
ARL3_DANRE1.047e-1846.00ADP-ribosylation factor-like protein 3 OS=Danio re... [more]
ARL5C_MOUSE2.333e-1844.09ADP-ribosylation factor-like protein 5C OS=Mus mus... [more]
ARL3_CAEEL2.333e-1845.36ADP-ribosylation factor-like protein 3 OS=Caenorha... [more]
ARF3_YEAST5.197e-1847.42ADP-ribosylation factor 3 OS=Saccharomyces cerevis... [more]
ARFF_DICDI3.369e-1741.18ADP-ribosylation factor F OS=Dictyostelium discoid... [more]
ARL2_DROME9.802e-1742.00ADP-ribosylation factor-like protein 2 OS=Drosophi... [more]
ARF5_ARATH4.865e-1642.57Probable ADP-ribosylation factor At2g18390 OS=Arab... [more]
ARL6_CAEBR8.298e-1644.44ADP-ribosylation factor-like protein 6 OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K15_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189311 ID=CN189311; Name=CN189311; organism=Citrus sinensis; type=EST; length=473bp
TATCCAACCAACAATTCTTCTATTACAATATAATTGTAAAGATCCTAGGA
CCAAAACAACACGACAACCCAAACGTCTCAAACAAAAAGGGTTAAAAAGA
AAAAAAAATAGATAATATTCACCCCTGCATCCAGAATTGCCAGTCCGCAA
AAAGATCTTAACAGCTTCAGGCCTTGTTAGCGATGTTGTTGGAGAGCCAA
TCCAGAACTTCATAAAGACCCTCACCAGAGGTTGCACAGGTGCTCTGGAT
GTACCAGTGGCGCTGCCTGAGGGAGTGGAGGCCAAGCTTATCAGTAATCT
CAGCAGCATTCATTGCATTTGGAAGATCCTGTTTGTTAGCAAATACAAGC
AACACTGCATCTCGCAGCTCATCCTCATTCAACATCCTATGCAATTCATC
CCTTGCTTCTAAAATACGGTCTCTGTCATTGCTGTCCAAAACAAAAATGA
GACCTTGAGTGTTCTGGAAATAA
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