CN189311

Overview
NameCN189311
Unique NameCN189311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13665 contig Csv1_Contig13665:325..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL4A_MOUSE (ADP-ribosylation factor-like protein 4A OS=Mus musculus GN=Arl4a PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.465e-12
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            Y + T G++FV+DS D +R+ EA+ ELH++    E +   +L+ ANKQDL N+++ +EI   L +  L     W++Q TCA  G+GL E L+ L + I  +
Sbjct:   89 YTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKR 189          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL4A_HUMAN (ADP-ribosylation factor-like protein 4A OS=Homo sapiens GN=ARL4A PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.465e-12
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            Y + T G++FV+DS D +R+ EA+ ELH++    E +   +L+ ANKQDL N+++ +EI   L +  L     W++Q TCA  G+GL E L+ L + I  +
Sbjct:   89 YTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKR 189          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL4A_BOVIN (ADP-ribosylation factor-like protein 4A OS=Bos taurus GN=ARL4A PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.465e-12
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            Y + T G++FV+DS D +R+ EA+ ELH++    E +   +L+ ANKQDL N+++ +EI   L +  L     W++Q TCA  G+GL E L+ L + I  +
Sbjct:   89 YTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKR 189          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL_SCHPO (ADP-ribosylation factor-like protein alp41 OS=Schizosaccharomyces pombe GN=alp41 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.913e-12
Identity = 34/97 (35.05%), Postives = 60/97 (61.86%), Query Frame = -2
Query:  182 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNI 472
            YF++T+ +I+V+DS D  R+ E R+ L  +L E++L    +LV ANK D+  A+++ EI+  L +   +  HW I S  A +G  + + + WL+N++
Sbjct:   80 YFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDL 176          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL14_MOUSE (ADP-ribosylation factor-like protein 14 OS=Mus musculus GN=Arl14 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.913e-12
Identity = 34/88 (38.64%), Postives = 57/88 (64.77%), Query Frame = -2
Query:  215 YFQNTQGLIFVLD-SNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGL 472
            Y +N QGL++V+D S  + R+ ++R E   +L  + +++  +++ ANKQDLP A++A +IT    +  L   R+WY+Q  CA +GEGL
Sbjct:   78 YCENAQGLMYVVDCSEGKKRLEDSRKEFKHILKNEHIKNTPVVILANKQDLPGALSAEDITRMFKVKKLCSNRNWYVQPCCAVTGEGL 165          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL11_BOVIN (ADP-ribosylation factor-like protein 11 OS=Bos taurus GN=ARL11 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.913e-12
Identity = 37/93 (39.78%), Postives = 56/93 (60.22%), Query Frame = -2
Query:  194 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWL 472
            + + T  L++VLDS D  R+ EA  EL  +L++  +    LLV ANKQ++P A++  EI D+LGL     R W +++  A +G GL E L+ L
Sbjct:   77 HLEGTDILVYVLDSTDEARLPEAVAELREVLDDPSVASVPLLVLANKQEVPQALSLPEIRDRLGLQGFLGRSWDLRACSALTGAGLPEALESL 169          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL3_PONAB (ADP-ribosylation factor-like protein 3 OS=Pongo abelii GN=ARL3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.619e-11
Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = -2
Query:  173 ELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 397
            EL  +L E++L    +L+FANKQDL  A  A+EI + L LH++R R W IQS  A +GEG+ + ++W+  N+  K
Sbjct:   89 ELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 163          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL11_HUMAN (ADP-ribosylation factor-like protein 11 OS=Homo sapiens GN=ARL11 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.608e-11
Identity = 35/104 (33.65%), Postives = 58/104 (55.77%), Query Frame = -2
Query:  161 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANKA*SC 472
            Y + T  L++VLDS D  R+ E+  EL  +LN+  +     LV ANKQ+ P+A+   +I ++L L   +   W ++   A +GEGL E L  L + + +++  C
Sbjct:   77 YLEGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAGVPFLVLANKQEAPDALPLLKIRNRLSLERFQDHCWELRGCSALTGEGLPEALQSLWSLLKSRSCMC 180          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL11_MOUSE (ADP-ribosylation factor-like protein 11 OS=Mus musculus GN=Arl11 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.037e-11
Identity = 34/93 (36.56%), Postives = 52/93 (55.91%), Query Frame = -2
Query:  194 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWL 472
            Y +    L++VLDS D  R+ EA  EL  +L +  +     LV ANKQ+ P A+   EI ++LGL   ++  W +++  A +G+GL E L  L
Sbjct:   77 YLEGIDLLVYVLDSTDEARLPEAVAELKEVLEDPNMAGVPFLVLANKQEAPGALPLLEIRNRLGLEGFQKHCWELRACSALTGQGLQEALQSL 169          
The following BLAST results are available for this feature:
BLAST of CN189311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
ARL4A_MOUSE1.465e-1238.61ADP-ribosylation factor-like protein 4A OS=Mus mus... [more]
ARL4A_HUMAN1.465e-1238.61ADP-ribosylation factor-like protein 4A OS=Homo sa... [more]
ARL4A_BOVIN1.465e-1238.61ADP-ribosylation factor-like protein 4A OS=Bos tau... [more]
ARL_SCHPO1.913e-1235.05ADP-ribosylation factor-like protein alp41 OS=Schi... [more]
ARL14_MOUSE1.913e-1238.64ADP-ribosylation factor-like protein 14 OS=Mus mus... [more]
ARL11_BOVIN1.913e-1239.78ADP-ribosylation factor-like protein 11 OS=Bos tau... [more]
ARL3_PONAB1.619e-1144.00ADP-ribosylation factor-like protein 3 OS=Pongo ab... [more]
ARL11_HUMAN3.608e-1133.65ADP-ribosylation factor-like protein 11 OS=Homo sa... [more]
ARL11_MOUSE8.037e-1136.56ADP-ribosylation factor-like protein 11 OS=Mus mus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K15_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189311 ID=CN189311; Name=CN189311; organism=Citrus sinensis; type=EST; length=473bp
TATCCAACCAACAATTCTTCTATTACAATATAATTGTAAAGATCCTAGGA
CCAAAACAACACGACAACCCAAACGTCTCAAACAAAAAGGGTTAAAAAGA
AAAAAAAATAGATAATATTCACCCCTGCATCCAGAATTGCCAGTCCGCAA
AAAGATCTTAACAGCTTCAGGCCTTGTTAGCGATGTTGTTGGAGAGCCAA
TCCAGAACTTCATAAAGACCCTCACCAGAGGTTGCACAGGTGCTCTGGAT
GTACCAGTGGCGCTGCCTGAGGGAGTGGAGGCCAAGCTTATCAGTAATCT
CAGCAGCATTCATTGCATTTGGAAGATCCTGTTTGTTAGCAAATACAAGC
AACACTGCATCTCGCAGCTCATCCTCATTCAACATCCTATGCAATTCATC
CCTTGCTTCTAAAATACGGTCTCTGTCATTGCTGTCCAAAACAAAAATGA
GACCTTGAGTGTTCTGGAAATAA
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