CN189311

Overview
NameCN189311
Unique NameCN189311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13665 contig Csv1_Contig13665:325..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF_CRYNE (ADP-ribosylation factor OS=Cryptococcus neoformans GN=ARF PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 7.963e-43
Identity = 82/101 (81.19%), Postives = 93/101 (92.08%), Query Frame = -2
Query:  170 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANKA 472
            YFQNTQG+IFV+DSNDR+RI EAR+EL RML+EDELRDA+LLVFANKQDLPNAMNAAEITDKLGLHSLRQR WYIQ+ CATSG+GLYE L+WLS N+  K+
Sbjct:   81 YFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRQRSWYIQAACATSGDGLYEGLEWLSANLKRKS 181          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF_NEUCR (ADP-ribosylation factor OS=Neurospora crassa GN=NCU08340 PE=3 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 1.040e-42
Identity = 81/101 (80.20%), Postives = 93/101 (92.08%), Query Frame = -2
Query:  170 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANKA 472
            YFQNTQG+IFV+DSNDRDR++EAR+EL RMLNEDELRDA+LLVFANKQDLPNAMNAAEITDKLGL SLRQR WYIQ+TCAT+G+GL+E LDWLS  +  K+
Sbjct:   84 YFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLSSLRQRSWYIQATCATTGDGLFEGLDWLSTELKKKS 184          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF12_CAEEL (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis elegans GN=arf-1.2 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 1.358e-42
Identity = 82/101 (81.19%), Postives = 92/101 (91.09%), Query Frame = -2
Query:  170 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANKA 472
            YFQNTQGLIFV+DSNDR+R+ EAR+EL RML EDELRDAVLLVFANKQDLP AMNAAE+TDKLGLHSLR R WYIQ+TCATSG+GLYE LDWLSN + N++
Sbjct:   81 YFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNRS 181          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF12_CAEBR (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis briggsae GN=arf-1.2 PE=3 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 1.358e-42
Identity = 82/101 (81.19%), Postives = 92/101 (91.09%), Query Frame = -2
Query:  170 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANKA 472
            YFQNTQGLIFV+DSNDR+R+ EAR+EL RML EDELRDAVLLVFANKQDLP AMNAAE+TDKLGLHSLR R WYIQ+TCATSG+GLYE LDWLSN + N++
Sbjct:   81 YFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNRS 181          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF1_DICDI (ADP-ribosylation factor 1 OS=Dictyostelium discoideum GN=arfA PE=1 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 3.346e-41
Identity = 80/101 (79.21%), Postives = 89/101 (88.12%), Query Frame = -2
Query:  170 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANKA 472
            YFQNTQGLIFV+DSNDR+RI EA DEL +MLNEDELRDAVLLVF NKQDLPNAM+ AE+TDKL LHSLR R WYIQSTCATSG+GLYE LDWLSN + + +
Sbjct:   81 YFQNTQGLIFVVDSNDRERIQEACDELTKMLNEDELRDAVLLVFCNKQDLPNAMSVAEVTDKLNLHSLRSRKWYIQSTCATSGDGLYEGLDWLSNTLTSSS 181          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF_ASHGO (ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1 PE=3 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 9.734e-41
Identity = 78/101 (77.23%), Postives = 92/101 (91.09%), Query Frame = -2
Query:  170 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANKA 472
            YF+NT+G+IFV+DSNDR RI EAR+ L RMLNEDE+R+AVLLVFANKQDLP AM+AAEIT+KLGLHS+RQR WYIQ+TCATSGEGLYE L+WLS N+ N+A
Sbjct:   81 YFRNTEGIIFVVDSNDRSRIAEAREVLQRMLNEDEIRNAVLLVFANKQDLPEAMSAAEITEKLGLHSIRQRPWYIQATCATSGEGLYEGLEWLSTNLKNQA 181          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF_CANAL (ADP-ribosylation factor OS=Candida albicans GN=ARF1 PE=3 SV=4)

HSP 1 Score: 161.384 bits (407), Expect = 1.836e-39
Identity = 75/97 (77.32%), Postives = 88/97 (90.72%), Query Frame = -2
Query:  182 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNI 472
            YFQNTQG+IFV+DSNDRDRI EAR+EL  MLNEDEL+DAVLLV ANKQDLPNAMNAAEIT+K+GLHS+  R W+IQ+TCAT+G+GLYE L+WLSN +
Sbjct:   81 YFQNTQGIIFVVDSNDRDRINEAREELQSMLNEDELKDAVLLVLANKQDLPNAMNAAEITEKMGLHSIMNRPWFIQATCATTGDGLYEGLEWLSNQV 177          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF2_DROME (ADP-ribosylation factor 2 OS=Drosophila melanogaster GN=Arf102F PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 1.836e-39
Identity = 79/100 (79.00%), Postives = 84/100 (84.00%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            YFQNTQGLIFV+DSNDRDRI EA  EL  ML EDELRDAVLLVFANKQDLPNAM AAE+TDKL L+ LR RHW+IQSTCAT G GLYE LDWLS  +A K
Sbjct:   81 YFQNTQGLIFVVDSNDRDRITEAERELQNMLQEDELRDAVLLVFANKQDLPNAMTAAELTDKLRLNQLRNRHWFIQSTCATQGHGLYEGLDWLSAELAKK 180          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF_AJECA (ADP-ribosylation factor OS=Ajellomyces capsulata GN=ARF PE=1 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 4.090e-39
Identity = 75/95 (78.95%), Postives = 88/95 (92.63%), Query Frame = -2
Query:  188 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSN 472
            YFQNTQG+IFV+DSNDRDR++EAR+EL RMLNEDELRDA+LLVFANKQDLPNAM+ AEIT +LGL SL +R WYIQSTCAT+G+GLYE L+WL+N
Sbjct:   81 YFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDALLLVFANKQDLPNAMSPAEITQQLGLQSLTRRAWYIQSTCATTGDGLYEGLEWLAN 175          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 5.341e-39
Identity = 75/101 (74.26%), Postives = 91/101 (90.10%), Query Frame = -2
Query:  170 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANKA 472
            Y++NT+G+IFV+DSNDR RI EAR+ + RMLNEDELR+AV LVFANKQDLP AM+AAEIT+KLGLHS+R R W+IQSTCATSGEGLYE L+WLSNN+ N++
Sbjct:   81 YYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLKNQS 181          
The following BLAST results are available for this feature:
BLAST of CN189311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
ARF_CRYNE7.963e-4381.19ADP-ribosylation factor OS=Cryptococcus neoformans... [more]
ARF_NEUCR1.040e-4280.20ADP-ribosylation factor OS=Neurospora crassa GN=NC... [more]
ARF12_CAEEL1.358e-4281.19ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF12_CAEBR1.358e-4281.19ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF1_DICDI3.346e-4179.21ADP-ribosylation factor 1 OS=Dictyostelium discoid... [more]
ARF_ASHGO9.734e-4177.23ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1... [more]
ARF_CANAL1.836e-3977.32ADP-ribosylation factor OS=Candida albicans GN=ARF... [more]
ARF2_DROME1.836e-3979.00ADP-ribosylation factor 2 OS=Drosophila melanogast... [more]
ARF_AJECA4.090e-3978.95ADP-ribosylation factor OS=Ajellomyces capsulata G... [more]
ARF2_YEAST5.341e-3974.26ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K15_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189311 ID=CN189311; Name=CN189311; organism=Citrus sinensis; type=EST; length=473bp
TATCCAACCAACAATTCTTCTATTACAATATAATTGTAAAGATCCTAGGA
CCAAAACAACACGACAACCCAAACGTCTCAAACAAAAAGGGTTAAAAAGA
AAAAAAAATAGATAATATTCACCCCTGCATCCAGAATTGCCAGTCCGCAA
AAAGATCTTAACAGCTTCAGGCCTTGTTAGCGATGTTGTTGGAGAGCCAA
TCCAGAACTTCATAAAGACCCTCACCAGAGGTTGCACAGGTGCTCTGGAT
GTACCAGTGGCGCTGCCTGAGGGAGTGGAGGCCAAGCTTATCAGTAATCT
CAGCAGCATTCATTGCATTTGGAAGATCCTGTTTGTTAGCAAATACAAGC
AACACTGCATCTCGCAGCTCATCCTCATTCAACATCCTATGCAATTCATC
CCTTGCTTCTAAAATACGGTCTCTGTCATTGCTGTCCAAAACAAAAATGA
GACCTTGAGTGTTCTGGAAATAA
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