CN189311

Overview
NameCN189311
Unique NameCN189311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF4_ARATH (Probable ADP-ribosylation factor At2g15310 OS=Arabidopsis thaliana GN=At2g15310 PE=2 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 4.532e-30
Identity = 63/100 (63.00%), Postives = 78/100 (78.00%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            YFQN QGLIFV+DS+D +R+ EAR+ELHR+L ++EL  A +LVFANKQD  NA+  AE+ +KLGLHSL +R W IQ T A SG+GLYE L+WLS  I NK
Sbjct:   81 YFQNAQGLIFVVDSSDSERLSEARNELHRILTDNELEGACVLVFANKQDSRNALPVAEVANKLGLHSLSKRCWLIQGTSAISGQGLYEGLEWLSTTIPNK 180          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 4.532e-30
Identity = 60/96 (62.50%), Postives = 78/96 (81.25%), Query Frame = -2
Query:  185 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNN 472
            Y+  TQGLIFV+D  DRDRI EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GL E L WL++N
Sbjct:   77 YYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLSEGLIWLTSN 172          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 2.750e-27
Identity = 55/97 (56.70%), Postives = 73/97 (75.26%), Query Frame = -2
Query:  182 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNI 472
            YF NTQ +I+V+DS+D DRI  A++E H +L EDEL+ AV+L+FANKQDLP A++ A +T+ L LH ++ R W I  TCA  GEGL+E LDWLSN +
Sbjct:   81 YFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTL 177          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 8.000e-27
Identity = 54/97 (55.67%), Postives = 73/97 (75.26%), Query Frame = -2
Query:  182 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNI 472
            YF NTQ +I+V+DS+D DRI  A++E H +L E+EL+ AV+L+FANKQDLP A++ A +T+ L LH ++ R W I  TCA  GEGL+E LDWLSN +
Sbjct:   81 YFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTL 177          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.772e-26
Identity = 56/96 (58.33%), Postives = 72/96 (75.00%), Query Frame = -2
Query:  185 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNN 472
            YF  T+GLIFV+DS D +RI EAR ELHR++++ E+RD +LLV ANKQDLP A++ A+ITD L L  L+ R W +Q TCA +G+GL E L WLS N
Sbjct:   85 YFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQN 180          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARD1_RAT (GTP-binding protein ARD-1 (Fragment) OS=Rattus norvegicus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.853e-24
Identity = 56/98 (57.14%), Postives = 70/98 (71.43%), Query Frame = -2
Query:  182 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEVLDWLSNNI 472
            Y+ NTQ ++FV+DS+ RDRI EA  EL ++L E ELRDA+LL+FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYE LDWLS  +
Sbjct:  448 YYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 545          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARD1_MOUSE (GTP-binding protein ARD-1 OS=Mus musculus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.853e-24
Identity = 56/98 (57.14%), Postives = 70/98 (71.43%), Query Frame = -2
Query:  182 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEVLDWLSNNI 472
            Y+ NTQ ++FV+DS+ RDRI EA  EL ++L E ELRDA+LL+FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYE LDWLS  +
Sbjct:  468 YYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 565          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARD1_HUMAN (GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM23 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.853e-24
Identity = 56/98 (57.14%), Postives = 70/98 (71.43%), Query Frame = -2
Query:  182 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEVLDWLSNNI 472
            Y+ NTQ ++FV+DS+ RDRI EA  EL ++L E ELRDA+LL+FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYE LDWLS  +
Sbjct:  468 YYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 565          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.008e-23
Identity = 46/100 (46.00%), Postives = 71/100 (71.00%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            Y+  +  +IFV+DS DR+R+ E ++E+  +L +DEL+   +LVFANKQD+ NAMN AEI + L L+S++ R WY+Q   A   +G+YE  DW++N++ NK
Sbjct:   89 YYHGSNAVIFVVDSTDRERMDEVKEEIDNLLIQDELKGTQILVFANKQDMNNAMNTAEIVNSLDLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSLNNK 188          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARFK_DICDI (ADP-ribosylation factor K OS=Dictyostelium discoideum GN=arrK PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.153e-23
Identity = 46/100 (46.00%), Postives = 70/100 (70.00%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            Y+  T  +IFV+DS DR+R+ E ++E+  +L +DEL+   +LV ANKQD+ NAMN AEI + L L+S++ R WY+Q   A   +G+YE  DW++N++ NK
Sbjct:   89 YYHGTNAIIFVVDSTDRERMDEVKEEIDNLLIQDELKGIQILVLANKQDMNNAMNTAEIVNSLNLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSLNNK 188          
The following BLAST results are available for this feature:
BLAST of CN189311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
ARF4_ARATH4.532e-3063.00Probable ADP-ribosylation factor At2g15310 OS=Arab... [more]
ARF3_DROME4.532e-3062.50ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF3_ARATH2.750e-2756.70ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]
ARF1_BRARP8.000e-2755.67ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARF2_SCHPO6.772e-2658.33Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARD1_RAT4.853e-2457.14GTP-binding protein ARD-1 (Fragment) OS=Rattus nor... [more]
ARD1_MOUSE4.853e-2457.14GTP-binding protein ARD-1 OS=Mus musculus GN=Trim2... [more]
ARD1_HUMAN4.853e-2457.14GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM2... [more]
ARFJ_DICDI7.008e-2346.00ADP-ribosylation factor J OS=Dictyostelium discoid... [more]
ARFK_DICDI9.153e-2346.00ADP-ribosylation factor K OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K15_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189311 ID=CN189311; Name=CN189311; organism=Citrus sinensis; type=EST; length=473bp
TATCCAACCAACAATTCTTCTATTACAATATAATTGTAAAGATCCTAGGA
CCAAAACAACACGACAACCCAAACGTCTCAAACAAAAAGGGTTAAAAAGA
AAAAAAAATAGATAATATTCACCCCTGCATCCAGAATTGCCAGTCCGCAA
AAAGATCTTAACAGCTTCAGGCCTTGTTAGCGATGTTGTTGGAGAGCCAA
TCCAGAACTTCATAAAGACCCTCACCAGAGGTTGCACAGGTGCTCTGGAT
GTACCAGTGGCGCTGCCTGAGGGAGTGGAGGCCAAGCTTATCAGTAATCT
CAGCAGCATTCATTGCATTTGGAAGATCCTGTTTGTTAGCAAATACAAGC
AACACTGCATCTCGCAGCTCATCCTCATTCAACATCCTATGCAATTCATC
CCTTGCTTCTAAAATACGGTCTCTGTCATTGCTGTCCAAAACAAAAATGA
GACCTTGAGTGTTCTGGAAATAA
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