CN189311

Overview
NameCN189311
Unique NameCN189311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARFD_DICDI (ADP-ribosylation factor D OS=Dictyostelium discoideum GN=arrD PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.119e-20
Identity = 46/97 (47.42%), Postives = 64/97 (65.98%), Query Frame = -2
Query:  182 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNI 472
            ++     +IFV+DS+DR RI EA  EL +++ E+EL+   LL+FA KQD  + M   E+TD+LGLH ++ R WY+Q T    G G+YE LDWLS  I
Sbjct:   81 FYNKCTAIIFVVDSSDRLRIDEAASELAKLMKEEELKGCSLLIFATKQDCISPMEIPELTDQLGLHDIKDRRWYVQPTRTLEGIGIYEGLDWLSTKI 177          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL2_CAEEL (ADP-ribosylation factor-like protein 2 OS=Caenorhabditis elegans GN=evl-20 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.461e-20
Identity = 44/100 (44.00%), Postives = 68/100 (68.00%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            YF++T  LI+V+DS+DR+R+L+  +EL ++L E+ L  A LLV ANK DLP A++   I   L LHS++  HW I S CA SG+ L + + WL +++ ++
Sbjct:   80 YFESTDALIWVVDSSDRERLLQCSEELKKLLGEERLAGASLLVLANKSDLPGAIDVNSIAQVLDLHSIKSHHWKIFSCCALSGDRLVQAMTWLCDDVGSR 179          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL5_CAEEL (ADP-ribosylation factor-like protein 5 OS=Caenorhabditis elegans GN=arl-5 PE=2 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 2.493e-20
Identity = 48/98 (48.98%), Postives = 66/98 (67.35%), Query Frame = -2
Query:  182 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-QRHWYIQSTCATSGEGLYEVLDWLSNNI 472
            Y+  T  +I V+DS+D  RI   +++LH ML  ++L  A +LV ANKQDLP AMN AE++ +LGL +LR  R W I   CA  GEGL E L+W++NN+
Sbjct:   81 YYVQTDVVIVVIDSSDTTRIPIMKEQLHNMLQHEDLARAHILVLANKQDLPGAMNPAEVSTQLGLQTLRGARKWQINGCCAVKGEGLPEALEWIANNL 178          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL5A_RAT (ADP-ribosylation factor-like protein 5A OS=Rattus norvegicus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.255e-20
Identity = 45/97 (46.39%), Postives = 68/97 (70.10%), Query Frame = -2
Query:  182 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNI 472
            Y+ NT+ +I V+DS DR+RI   R+EL++ML  ++LR A LL+FANKQD+   M  AEI+  L L S++   W+IQ+ CA +GEGL + L+W+ + +
Sbjct:   80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL5A_MOUSE (ADP-ribosylation factor-like protein 5A OS=Mus musculus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.255e-20
Identity = 45/97 (46.39%), Postives = 68/97 (70.10%), Query Frame = -2
Query:  182 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNI 472
            Y+ NT+ +I V+DS DR+RI   R+EL++ML  ++LR A LL+FANKQD+   M  AEI+  L L S++   W+IQ+ CA +GEGL + L+W+ + +
Sbjct:   80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL5A_HUMAN (ADP-ribosylation factor-like protein 5A OS=Homo sapiens GN=ARL5A PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.255e-20
Identity = 45/97 (46.39%), Postives = 68/97 (70.10%), Query Frame = -2
Query:  182 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNI 472
            Y+ NT+ +I V+DS DR+RI   R+EL++ML  ++LR A LL+FANKQD+   M  AEI+  L L S++   W+IQ+ CA +GEGL + L+W+ + +
Sbjct:   80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL5A_BOVIN (ADP-ribosylation factor-like protein 5A OS=Bos taurus GN=ARL5A PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.255e-20
Identity = 45/97 (46.39%), Postives = 68/97 (70.10%), Query Frame = -2
Query:  182 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNI 472
            Y+ NT+ +I V+DS DR+RI   R+EL++ML  ++LR A LL+FANKQD+   M  AEI+  L L S++   W+IQ+ CA +GEGL + L+W+ + +
Sbjct:   80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKGCMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL3_TAEGU (ADP-ribosylation factor-like protein 3 OS=Taeniopygia guttata GN=ARL3 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.553e-20
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            YF+NT  LI+V+DS DR R  E   EL  +L+E++L    +L+FANKQDL  A  A+EI + L LH++R R W IQS  A SGEG+ + ++W+  N++ K
Sbjct:   81 YFENTDILIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALSGEGVQDGMNWVCKNVSTK 180          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL2_BOVIN (ADP-ribosylation factor-like protein 2 OS=Bos taurus GN=ARL2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.553e-20
Identity = 46/100 (46.00%), Postives = 68/100 (68.00%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            YF++T GLI+V+DS DR R+ + + EL  +L E+ L  A LL+FANKQDLP A+++  I + L L S+R  HW IQ   A +GE L   +DWL ++I+++
Sbjct:   80 YFESTDGLIWVVDSADRQRMQDCQRELQNLLVEERLAGATLLIFANKQDLPGALSSNAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 179          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARL2_HUMAN (ADP-ribosylation factor-like protein 2 OS=Homo sapiens GN=ARL2 PE=1 SV=4)

HSP 1 Score: 95.9005 bits (237), Expect = 9.472e-20
Identity = 46/100 (46.00%), Postives = 68/100 (68.00%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            YF++T GLI+V+DS DR R+ + + EL  +L E+ L  A LL+FANKQDLP A+++  I + L L S+R  HW IQ   A +GE L   +DWL ++I+++
Sbjct:   80 YFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 179          
The following BLAST results are available for this feature:
BLAST of CN189311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
ARFD_DICDI1.119e-2047.42ADP-ribosylation factor D OS=Dictyostelium discoid... [more]
ARL2_CAEEL1.461e-2044.00ADP-ribosylation factor-like protein 2 OS=Caenorha... [more]
ARL5_CAEEL2.493e-2048.98ADP-ribosylation factor-like protein 5 OS=Caenorha... [more]
ARL5A_RAT3.255e-2046.39ADP-ribosylation factor-like protein 5A OS=Rattus ... [more]
ARL5A_MOUSE3.255e-2046.39ADP-ribosylation factor-like protein 5A OS=Mus mus... [more]
ARL5A_HUMAN3.255e-2046.39ADP-ribosylation factor-like protein 5A OS=Homo sa... [more]
ARL5A_BOVIN3.255e-2046.39ADP-ribosylation factor-like protein 5A OS=Bos tau... [more]
ARL3_TAEGU5.553e-2047.00ADP-ribosylation factor-like protein 3 OS=Taeniopy... [more]
ARL2_BOVIN5.553e-2046.00ADP-ribosylation factor-like protein 2 OS=Bos taur... [more]
ARL2_HUMAN9.472e-2046.00ADP-ribosylation factor-like protein 2 OS=Homo sap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001K15_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189311 ID=CN189311; Name=CN189311; organism=Citrus sinensis; type=EST; length=473bp
TATCCAACCAACAATTCTTCTATTACAATATAATTGTAAAGATCCTAGGA
CCAAAACAACACGACAACCCAAACGTCTCAAACAAAAAGGGTTAAAAAGA
AAAAAAAATAGATAATATTCACCCCTGCATCCAGAATTGCCAGTCCGCAA
AAAGATCTTAACAGCTTCAGGCCTTGTTAGCGATGTTGTTGGAGAGCCAA
TCCAGAACTTCATAAAGACCCTCACCAGAGGTTGCACAGGTGCTCTGGAT
GTACCAGTGGCGCTGCCTGAGGGAGTGGAGGCCAAGCTTATCAGTAATCT
CAGCAGCATTCATTGCATTTGGAAGATCCTGTTTGTTAGCAAATACAAGC
AACACTGCATCTCGCAGCTCATCCTCATTCAACATCCTATGCAATTCATC
CCTTGCTTCTAAAATACGGTCTCTGTCATTGCTGTCCAAAACAAAAATGA
GACCTTGAGTGTTCTGGAAATAA
back to top