CN189308

Overview
NameCN189308
Unique NameCN189308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P_DROHY (Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.229e-12
Identity = 29/46 (63.04%), Postives = 40/46 (86.96%), Query Frame = -1
Query:  383 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 520
            F+ D+ SS+F+ KAGI L+  F+KL+SWYDNE+GYSNRV+DLI++M
Sbjct:  283 FLSDTHSSVFEPKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.229e-12
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = -1
Query:  383 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 520
            FVGD+ SSIFDA AGI L+ +F+KL+SWYDNE+GYS+RV DL+ +M
Sbjct:  286 FVGDTHSSIFDAGAGISLNDNFVKLISWYDNEFGYSHRVADLLMYM 331          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P3_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis elegans GN=gpd-3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.229e-12
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = -1
Query:  371 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVA 520
            FV D+ SSIFDA A I L+  F+KLVSWYDNE+GYSNRV+DLI ++A  A
Sbjct:  292 FVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIATKA 341          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P2_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis elegans GN=gpd-2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 9.229e-12
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = -1
Query:  371 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVA 520
            FV D+ SSIFDA A I L+  F+KLVSWYDNE+GYSNRV+DLI ++A  A
Sbjct:  292 FVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIATKA 341          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P1_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhizomucor racemosus GN=GPD1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.229e-12
Identity = 31/49 (63.27%), Postives = 41/49 (83.67%), Query Frame = -1
Query:  374 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALV 520
            FVG+  SS+FDA AGI L+ +F+KL++WYDNE+GYSNRV+DL+ H A V
Sbjct:  285 FVGEVCSSVFDAAAGIQLTPTFVKLIAWYDNEYGYSNRVVDLLVHAAKV 333          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.205e-11
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = -1
Query:  368 GDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 514
            GD+ S IFDA AGI L+  F+KLV+WYDNEWGYS RV+DLI ++A V A
Sbjct:  287 GDTHSCIFDATAGIALNDHFIKLVAWYDNEWGYSRRVIDLIAYIAGVDA 335          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3PC_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Gracilaria verrucosa GN=GAPC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.205e-11
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = -1
Query:  380 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 520
            F+ +  S +FDA AGI L++ F KLV+WYDNEWGYSNRV+DLI H+A
Sbjct:  286 FIHEEASCVFDAGAGIMLNSRFCKLVAWYDNEWGYSNRVVDLIAHVA 332          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P_DICDI (Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyostelium discoideum GN=gpdA PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.574e-11
Identity = 30/47 (63.83%), Postives = 40/47 (85.11%), Query Frame = -1
Query:  380 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 520
            F+GD+ SSIFDA AGI L+ +F+KLVSWYDNE GYS RV+DL+ +++
Sbjct:  286 FIGDTHSSIFDAHAGIALNDNFVKLVSWYDNEMGYSTRVIDLLVYIS 332          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.056e-11
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = -1
Query:  380 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 520
            F  D+ SS FDA AGI L+  F+KL+SWYDNE+GYSNRV+DL+ HMA
Sbjct:  286 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMA 332          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P_FELCA (Glyceraldehyde-3-phosphate dehydrogenase OS=Felis catus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.056e-11
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = -1
Query:  380 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 520
            F  D+ SS FDA AGI L+  F+KL+SWYDNE+GYSNRV+DL+ HMA
Sbjct:  284 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMA 330          
The following BLAST results are available for this feature:
BLAST of CN189308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
G3P_DROHY9.229e-1263.04Glyceraldehyde-3-phosphate dehydrogenase OS=Drosop... [more]
G3PT_DANRE9.229e-1267.39Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
G3P3_CAEEL9.229e-1266.00Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_CAEEL9.229e-1266.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P1_RHIRA9.229e-1263.27Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhiz... [more]
G3P_COCIM1.205e-1165.31Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3PC_GRAVE1.205e-1163.83Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_DICDI1.574e-1163.83Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyo... [more]
G3P_HUMAN2.056e-1165.96Glyceraldehyde-3-phosphate dehydrogenase OS=Homo s... [more]
G3P_FELCA2.056e-1165.96Glyceraldehyde-3-phosphate dehydrogenase OS=Felis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K13_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189308 ID=CN189308; Name=CN189308; organism=Citrus sinensis; type=EST; length=520bp
TTTTTTTTTTTTTTTTAACAGAAGCACTTGTACAAAATTTATTTAATGAA
TTTAATGCTAACAGAGCAGTTAATAAGCAGGGTTGATGGTTGCATACACA
GCATGGTAAAATGGGGTTCATTATGTAGATGACTAGGATGCCCAGAATCC
AAACAAAGATGGTAGTAGTGGAATGAACTCCATACACTTTGAATATTCTA
TTCCATTATTTTAAAATTTGCATCAAGGGATGTCCAAAGTTCATATTGCG
AGTCACTCAGAACAAAACGCAGAATCACTATCAAATTTTTAACTACTCTT
TCAATCTAACCCAAAAGCATGCACTAAAATTGCAGCAGCAGCAAACCAAT
TTTACTGTTTAGTTGTGGGCCGCTACCAATGCCATGTGCTCGATGAGGTC
CAACACTCGATTGCTGTATCCCCACTCGTTGTCGTACCATGACACAAGCT
TCATGAAGGATGCACTCAATCCAATCCCAGCCTTCGCATCAAATATACTT
GACCTCGAGTCTCCAACAAA
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