CN189308

Overview
NameCN189308
Unique NameCN189308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189308_ssr332 microsatellite CN189308_ssr332:332..343. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P1_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caenorhabditis elegans GN=gpd-1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.507e-11
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = -1
Query:  380 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 520
            FV D  SSIFDA A I L+ +F+KLVSWYDNE+GYSNRV+DLI ++A
Sbjct:  292 FVSDPHSSIFDAGACISLNPNFVKLVSWYDNEYGYSNRVVDLIGYIA 338          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P_PONAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo abelii GN=GAPDH PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = -1
Query:  380 DSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 511
            D+ SS FDA AGI L+  F+KL+SWYDNE+GYSNRV+DL+ HMA
Sbjct:  289 DTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMA 332          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11
Identity = 29/47 (61.70%), Postives = 40/47 (85.11%), Query Frame = -1
Query:  380 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 520
            F GD+ SSIFD+ A I L+ +F+KL++WYDNE+GYSNRV+DLI ++A
Sbjct:  291 FTGDTHSSIFDSLACISLNPNFVKLIAWYDNEYGYSNRVVDLISYIA 337          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P_RAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = -1
Query:  380 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 520
            F  +S SS FDA AGI L+ +F+KL+SWYDNE+GYSNRV+DL+ +MA
Sbjct:  284 FNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMA 330          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = -1
Query:  380 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 520
            F  +S SS FDA AGI L+ +F+KL+SWYDNE+GYSNRV+DL+ +MA
Sbjct:  284 FNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMA 330          
The following BLAST results are available for this feature:
BLAST of CN189308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
G3P1_CAEEL3.507e-1168.09Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caen... [more]
G3P_PONAB4.580e-1168.18Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo ... [more]
G3P_BRUMA4.580e-1161.70Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]
G3P_RAT7.813e-1163.83Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus... [more]
G3P_MOUSE7.813e-1163.83Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K13_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189308 ID=CN189308; Name=CN189308; organism=Citrus sinensis; type=EST; length=520bp
TTTTTTTTTTTTTTTTAACAGAAGCACTTGTACAAAATTTATTTAATGAA
TTTAATGCTAACAGAGCAGTTAATAAGCAGGGTTGATGGTTGCATACACA
GCATGGTAAAATGGGGTTCATTATGTAGATGACTAGGATGCCCAGAATCC
AAACAAAGATGGTAGTAGTGGAATGAACTCCATACACTTTGAATATTCTA
TTCCATTATTTTAAAATTTGCATCAAGGGATGTCCAAAGTTCATATTGCG
AGTCACTCAGAACAAAACGCAGAATCACTATCAAATTTTTAACTACTCTT
TCAATCTAACCCAAAAGCATGCACTAAAATTGCAGCAGCAGCAAACCAAT
TTTACTGTTTAGTTGTGGGCCGCTACCAATGCCATGTGCTCGATGAGGTC
CAACACTCGATTGCTGTATCCCCACTCGTTGTCGTACCATGACACAAGCT
TCATGAAGGATGCACTCAATCCAATCCCAGCCTTCGCATCAAATATACTT
GACCTCGAGTCTCCAACAAA
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