CN189308

Overview
NameCN189308
Unique NameCN189308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P_MASBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Mastigamoeba balamuthi GN=GAPD PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.550e-14
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = -1
Query:  386 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEH 520
            FVG+  SSIFDAKAGI L  +F+KLVSWYDNEWGYSNRV+DL+ H
Sbjct:  290 FVGEPMSSIFDAKAGIALDKTFVKLVSWYDNEWGYSNRVVDLLLH 334          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.860e-14
Identity = 33/47 (70.21%), Postives = 42/47 (89.36%), Query Frame = -1
Query:  380 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 520
            F+GD RSSIFDA AGI L+ SF+KL+SWYDNE+GYS RV+DL++H+A
Sbjct:  285 FLGDERSSIFDASAGIQLTPSFVKLISWYDNEYGYSTRVVDLLQHVA 331          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.860e-14
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = -1
Query:  380 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 520
            F+GD+RSSIFDAKAGI L+  F+KLVSWYDNE GYS RV+DLI H+A
Sbjct:  289 FIGDTRSSIFDAKAGIALNDKFVKLVSWYDNELGYSTRVVDLIVHIA 335          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P_GLOMM (Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 33/46 (71.74%), Postives = 42/46 (91.30%), Query Frame = -1
Query:  383 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 520
            FVGD+ SS+FDAKAGI L+  F+KL+SWYDNE+GYSNRV+DLI++M
Sbjct:  283 FVGDTHSSVFDAKAGIPLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P_ASHGO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = -1
Query:  380 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 520
            F+GD+ SSIFDA AGI LS  F+KLVSWYDNE+GYS RV+DL+EH+A
Sbjct:  283 FLGDNNSSIFDASAGIMLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 329          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = -1
Query:  368 GDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 514
            GDSRSSIFDA AGI L+  F+KL+SWYDNEWGYS RV+DLI ++A V A
Sbjct:  287 GDSRSSIFDASAGIALNDHFIKLISWYDNEWGYSRRVVDLIAYIAKVDA 335          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.682e-13
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = -1
Query:  380 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 520
            F+G+S SSIFDA AGI L+ +F+KLVSWYDNEWGYSNR LDL+  MA
Sbjct:  286 FIGNSHSSIFDAAAGISLNNNFVKLVSWYDNEWGYSNRCLDLLVFMA 332          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.682e-13
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = -1
Query:  374 GDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALV 514
            G+  SSIFDAKAGI L+  F+KLVSWYDNEWGYS RVLDLI H+A V
Sbjct:  287 GNPNSSIFDAKAGISLNDHFVKLVSWYDNEWGYSRRVLDLISHVAKV 333          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.682e-13
Identity = 34/49 (69.39%), Postives = 42/49 (85.71%), Query Frame = -1
Query:  368 GDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 514
            GD  SSIFDAKAGI L+++F+KLVSWYDNEWGYS RV+DLI +++ V A
Sbjct:  287 GDDHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVVDLIAYISKVDA 335          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3PT_MACFA (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Macaca fascicularis GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.682e-13
Identity = 33/46 (71.74%), Postives = 42/46 (91.30%), Query Frame = -1
Query:  383 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 520
            FVGDS SSIFDAKAGI L+ +F+KL+SWYDNE+GYS+RV+DL+ +M
Sbjct:  359 FVGDSHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYM 404          
The following BLAST results are available for this feature:
BLAST of CN189308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
G3P_MASBA7.550e-1475.56Glyceraldehyde-3-phosphate dehydrogenase OS=Mastig... [more]
G3P_PICPA9.860e-1470.21Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3PC_PEA9.860e-1474.47Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_GLOMM1.288e-1371.74Glyceraldehyde-3-phosphate dehydrogenase OS=Glossi... [more]
G3P_ASHGO1.288e-1372.34Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya... [more]
G3P_AJECA1.288e-1371.43Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]
G3P_USTMA1.682e-1372.34Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]
G3P_CRYPA1.682e-1374.47Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]
G3P_ASPNG1.682e-1369.39Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3PT_MACFA1.682e-1371.74Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K13_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189308 ID=CN189308; Name=CN189308; organism=Citrus sinensis; type=EST; length=520bp
TTTTTTTTTTTTTTTTAACAGAAGCACTTGTACAAAATTTATTTAATGAA
TTTAATGCTAACAGAGCAGTTAATAAGCAGGGTTGATGGTTGCATACACA
GCATGGTAAAATGGGGTTCATTATGTAGATGACTAGGATGCCCAGAATCC
AAACAAAGATGGTAGTAGTGGAATGAACTCCATACACTTTGAATATTCTA
TTCCATTATTTTAAAATTTGCATCAAGGGATGTCCAAAGTTCATATTGCG
AGTCACTCAGAACAAAACGCAGAATCACTATCAAATTTTTAACTACTCTT
TCAATCTAACCCAAAAGCATGCACTAAAATTGCAGCAGCAGCAAACCAAT
TTTACTGTTTAGTTGTGGGCCGCTACCAATGCCATGTGCTCGATGAGGTC
CAACACTCGATTGCTGTATCCCCACTCGTTGTCGTACCATGACACAAGCT
TCATGAAGGATGCACTCAATCCAATCCCAGCCTTCGCATCAAATATACTT
GACCTCGAGTCTCCAACAAA
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