CN189308

Overview
NameCN189308
Unique NameCN189308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P2_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Trichoderma koningii GN=gpd2 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.682e-13
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = -1
Query:  368 VGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 517
            +G++ SSIFD KAGI L+ +F+KLVSWYDNEWGYS RVLDL+ H+A V A
Sbjct:  287 LGNTNSSIFDIKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLAHVAKVDA 336          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P_SCLSC (Glyceraldehyde-3-phosphate dehydrogenase OS=Sclerotinia sclerotiorum GN=GPD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 33/47 (70.21%), Postives = 41/47 (87.23%), Query Frame = -1
Query:  374 GDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALV 514
            GD+ SSIFDAKAGI L+ +F+KLVSWYDNEWGYS RVLDL+ +++ V
Sbjct:  288 GDNHSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLHYISKV 334          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = -1
Query:  368 GDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 514
            GD RSSIFDA AGI L+  F+KL+SWYDNEWGYS RVLDLI ++A V A
Sbjct:  288 GDPRSSIFDASAGIALNDRFVKLISWYDNEWGYSRRVLDLIAYIAKVDA 336          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P_SORMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Sordaria macrospora GN=GPD PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.869e-13
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = -1
Query:  368 GDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 514
            G+  SSIFDAKAGI L+ +F+KLVSWYDNEWGYS RVLDLI ++A V A
Sbjct:  287 GNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYVAKVDA 335          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P_ASPOR (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae GN=gpdA PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.869e-13
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = -1
Query:  374 VGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALV 517
            +GD+ SSIFDAKAGI L+  F+KLVSWYDNEWGYS RV+DLI +++ V
Sbjct:  288 IGDAHSSIFDAKAGIALNEHFIKLVSWYDNEWGYSRRVVDLIAYISKV 335          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.869e-13
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = -1
Query:  368 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 520
            FVGD++SSIFDA AGI L+  F+KLVSWYDNE+GYSNRV+DL+ + A V A
Sbjct:  285 FVGDAQSSIFDAAAGIALNDKFVKLVSWYDNEFGYSNRVIDLLAYAAKVDA 335          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P3_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhizomucor racemosus GN=GPD3 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.893e-13
Identity = 33/47 (70.21%), Postives = 42/47 (89.36%), Query Frame = -1
Query:  380 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 520
            FVGD+ SSIFDAKAGI LS +F+KL+SWYDNE+GYS RV+DL+ ++A
Sbjct:  287 FVGDAHSSIFDAKAGIQLSPTFVKLISWYDNEFGYSTRVVDLLAYVA 333          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.893e-13
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = -1
Query:  380 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 520
            F GD+ SSIFDA AGI LS  F+KLVSWYDNEWGYS+RV+DL+ + A
Sbjct:  286 FCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSHRVVDLVAYTA 332          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.391e-13
Identity = 33/47 (70.21%), Postives = 42/47 (89.36%), Query Frame = -1
Query:  380 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 520
            F+GD+ SSIFDAKAGIGL+ +F+KL+SWYDNE+GYS RV+DLI  +A
Sbjct:  286 FIGDTHSSIFDAKAGIGLNDNFVKLISWYDNEYGYSARVVDLIVAVA 332          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.391e-13
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = -1
Query:  368 GDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 514
            G+  SSIFDAKAGI L+ +F+KLVSWYDNEWGYS RVLDLI +++ V A
Sbjct:  287 GNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYISKVDA 335          
The following BLAST results are available for this feature:
BLAST of CN189308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
G3P2_TRIKO1.682e-1368.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Tric... [more]
G3P_SCLSC2.197e-1370.21Glyceraldehyde-3-phosphate dehydrogenase OS=Sclero... [more]
G3P_PARBA2.197e-1371.43Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P_SORMA2.869e-1371.43Glyceraldehyde-3-phosphate dehydrogenase OS=Sordar... [more]
G3P_ASPOR2.869e-1368.75Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P2_RHIRA2.869e-1368.63Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]
G3P3_RHIRA4.893e-1370.21Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhiz... [more]
G3P2_SCHPO4.893e-1370.21Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3P_YARLI6.391e-1370.21Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_NEUCR6.391e-1369.39Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K13_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189308 ID=CN189308; Name=CN189308; organism=Citrus sinensis; type=EST; length=520bp
TTTTTTTTTTTTTTTTAACAGAAGCACTTGTACAAAATTTATTTAATGAA
TTTAATGCTAACAGAGCAGTTAATAAGCAGGGTTGATGGTTGCATACACA
GCATGGTAAAATGGGGTTCATTATGTAGATGACTAGGATGCCCAGAATCC
AAACAAAGATGGTAGTAGTGGAATGAACTCCATACACTTTGAATATTCTA
TTCCATTATTTTAAAATTTGCATCAAGGGATGTCCAAAGTTCATATTGCG
AGTCACTCAGAACAAAACGCAGAATCACTATCAAATTTTTAACTACTCTT
TCAATCTAACCCAAAAGCATGCACTAAAATTGCAGCAGCAGCAAACCAAT
TTTACTGTTTAGTTGTGGGCCGCTACCAATGCCATGTGCTCGATGAGGTC
CAACACTCGATTGCTGTATCCCCACTCGTTGTCGTACCATGACACAAGCT
TCATGAAGGATGCACTCAATCCAATCCCAGCCTTCGCATCAAATATACTT
GACCTCGAGTCTCCAACAAA
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