CN189306

Overview
NameCN189306
Unique NameCN189306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_AETCO (50S ribosomal protein L2, chloroplastic OS=Aethionema cordifolium GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2
Query:  370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684
            G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--IKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2B_POPAL (50S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2
Query:  370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684
            G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  136 GTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2A_POPAL (50S ribosomal protein L2-A, chloroplastic OS=Populus alba GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2
Query:  370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684
            G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  137 GTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 234          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.076e-14
Identity = 51/116 (43.97%), Postives = 63/116 (54.31%), Query Frame = -2
Query:  337 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV 684
            G  V ++E H G    LARA+G YA II          V+LPSG +K+I S CRA IG V+      + L KAG +    R      P VRGVAMNPV+HPHGGG  +  G   +V
Sbjct:  372 GTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ--CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRR-----PIVRGVAMNPVDHPHGGGEGRTKGGRPSV 480          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.076e-14
Identity = 51/116 (43.97%), Postives = 63/116 (54.31%), Query Frame = -2
Query:  337 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV 684
            G  V ++E H G    LARA+G YA II          V+LPSG +K+I S CRA IG V+      + L KAG +    R      P VRGVAMNPV+HPHGGG  +  G   +V
Sbjct:  372 GTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ--CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRR-----PIVRGVAMNPVDHPHGGGEGRTKGGRPSV 480          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.076e-14
Identity = 51/116 (43.97%), Postives = 63/116 (54.31%), Query Frame = -2
Query:  337 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV 684
            G  V ++E H G    LARA+G YA II          V+LPSG +K+I S CRA IG V+      + L KAG +    R      P VRGVAMNPV+HPHGGG  +  G   +V
Sbjct:  372 GTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ--CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRR-----PIVRGVAMNPVDHPHGGGEGRTKGGRPSV 480          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_MANES (50S ribosomal protein L2, chloroplastic OS=Manihot esculenta GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.076e-14
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2
Query:  370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684
            G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  139 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNTGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 236          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_VITVI (50S ribosomal protein L2, chloroplastic OS=Vitis vinifera GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2
Query:  370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684
            G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_SINAL (50S ribosomal protein L2, chloroplastic OS=Sinapis alba GN=rpl2 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2
Query:  370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684
            G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_NYMAL (50S ribosomal protein L2, chloroplastic OS=Nymphaea alba GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 46/109 (42.20%), Postives = 60/109 (55.05%), Query Frame = -2
Query:  370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684
            G  + N+E  +G  G LARA+G  A +I+    + T R  LPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLR--LPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
The following BLAST results are available for this feature:
BLAST of CN189306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_AETCO1.590e-1442.2050S ribosomal protein L2, chloroplastic OS=Aethion... [more]
RK2B_POPAL1.590e-1442.2050S ribosomal protein L2-B, chloroplastic OS=Popul... [more]
RK2A_POPAL1.590e-1442.2050S ribosomal protein L2-A, chloroplastic OS=Popul... [more]
RM02_ORYSJ2.076e-1443.9760S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSI2.076e-1443.9760S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSA2.076e-1443.9760S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RK2_MANES2.076e-1442.2050S ribosomal protein L2, chloroplastic OS=Manihot... [more]
RK2_VITVI2.712e-1442.2050S ribosomal protein L2, chloroplastic OS=Vitis v... [more]
RK2_SINAL2.712e-1442.2050S ribosomal protein L2, chloroplastic OS=Sinapis... [more]
RK2_NYMAL2.712e-1442.2050S ribosomal protein L2, chloroplastic OS=Nymphae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K12_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189306 ID=CN189306; Name=CN189306; organism=Citrus sinensis; type=EST; length=688bp
TTTTTTTTTTTTTTTCGATGAAGGCATCCATTAATATATCCAAAAATATC
AAAATCAACTAAAGTTTAGGATAAGAGCAAATTAAGCTAAACTTTAAGCC
AACATAATTTAACATCAGGATCATCCCAAAGATCCAAATCTGAACAAATT
TTTCTAAGGTAATGATGCAGCAGGAAAAGTAAAATGACAGATCGCGATAG
AGAGACGATTTGTTGTAACACAAAGGATTTAAGCCTTGTCGGCCTTGGCT
GCAGTGGCAGCAGCTTGTCCTCTGAGCCGACCAGTCCTCCTGGCTGCAAT
AAGACCAACCTTCTGGCCAGGAGGAGCATCACGCCTAACAGTGCTAGCAT
GACCAATGTGCTGGTGGTTACCTCCTCCATGAGGATGCTCCACTGGGTTC
ATGGCCACACCACGCACCTTAGGCCAGCAGTTTCGCTTCACTCTGAATTT
GTGGTATGCATTACCAGCTTTGAGAAGGGGCTTCTCAGTCCTCCCTCCGC
CGGCAACCTGCCCAATCATCGCTCTGCAGCCACTTGGAATAATCTTTTTG
GCACCAGATGGAAGCTTGACCCTGGTGGTGTCATTATCGGGGTTATGACT
GATGATAACGGCATAATCACCAGAAGCTCTAGCCAAAACACCGCGATCAC
CAACATGATGCTCAACGTTGCAAACAACAGCTCCTTCA
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