CN189306
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_AETCO (50S ribosomal protein L2, chloroplastic OS=Aethionema cordifolium GN=rpl2-A PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14 Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 Query: 370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684 G + N+E +G G LARA+G A +I+ + T +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--IKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2B_POPAL (50S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14 Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 Query: 370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684 G + N+E +G G LARA+G A +I+ + T +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 136 GTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2A_POPAL (50S ribosomal protein L2-A, chloroplastic OS=Populus alba GN=rpl2-A PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14 Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 Query: 370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684 G + N+E +G G LARA+G A +I+ + T +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 137 GTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 234
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.076e-14 Identity = 51/116 (43.97%), Postives = 63/116 (54.31%), Query Frame = -2 Query: 337 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV 684 G V ++E H G LARA+G YA II V+LPSG +K+I S CRA IG V+ + L KAG + R P VRGVAMNPV+HPHGGG + G +V Sbjct: 372 GTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ--CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRR-----PIVRGVAMNPVDHPHGGGEGRTKGGRPSV 480
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.076e-14 Identity = 51/116 (43.97%), Postives = 63/116 (54.31%), Query Frame = -2 Query: 337 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV 684 G V ++E H G LARA+G YA II V+LPSG +K+I S CRA IG V+ + L KAG + R P VRGVAMNPV+HPHGGG + G +V Sbjct: 372 GTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ--CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRR-----PIVRGVAMNPVDHPHGGGEGRTKGGRPSV 480
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.076e-14 Identity = 51/116 (43.97%), Postives = 63/116 (54.31%), Query Frame = -2 Query: 337 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV 684 G V ++E H G LARA+G YA II V+LPSG +K+I S CRA IG V+ + L KAG + R P VRGVAMNPV+HPHGGG + G +V Sbjct: 372 GTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ--CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRR-----PIVRGVAMNPVDHPHGGGEGRTKGGRPSV 480
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_MANES (50S ribosomal protein L2, chloroplastic OS=Manihot esculenta GN=rpl2-A PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.076e-14 Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 Query: 370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684 G + N+E +G G LARA+G A +I+ + T +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 139 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNTGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 236
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_VITVI (50S ribosomal protein L2, chloroplastic OS=Vitis vinifera GN=rpl2-A PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14 Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 Query: 370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684 G + N+E +G G LARA+G A +I+ + T +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_SINAL (50S ribosomal protein L2, chloroplastic OS=Sinapis alba GN=rpl2 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14 Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 Query: 370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684 G + N+E +G G LARA+G A +I+ + T +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_NYMAL (50S ribosomal protein L2, chloroplastic OS=Nymphaea alba GN=rpl2-A PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14 Identity = 46/109 (42.20%), Postives = 60/109 (55.05%), Query Frame = -2 Query: 370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684 G + N+E +G G LARA+G A +I+ + T R LPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLR--LPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233 The following BLAST results are available for this feature:
BLAST of CN189306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189306 ID=CN189306; Name=CN189306; organism=Citrus sinensis; type=EST; length=688bpback to top |