CN189306
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_NASOF (50S ribosomal protein L2, chloroplastic OS=Nasturtium officinale GN=rpl2-A PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14 Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 Query: 370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684 G + N+E +G G LARA+G A +I+ + T +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_LOBMA (50S ribosomal protein L2, chloroplastic OS=Lobularia maritima GN=rpl2-A PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14 Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 Query: 370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684 G + N+E +G G LARA+G A +I+ + T +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_LEPVR (50S ribosomal protein L2, chloroplastic OS=Lepidium virginicum GN=rpl2-A PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14 Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 Query: 370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684 G + N+E +G G LARA+G A +I+ + T +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_DRANE (50S ribosomal protein L2, chloroplastic OS=Draba nemorosa GN=rpl2-A PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14 Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 Query: 370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684 G + N+E +G G LARA+G A +I+ + T +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_CRUWA (50S ribosomal protein L2, chloroplastic OS=Crucihimalaya wallichii GN=rpl2-A PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14 Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 Query: 370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684 G + N+E +G G LARA+G A +I+ + T +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_CARPA (50S ribosomal protein L2, chloroplastic OS=Carica papaya GN=rpl2-A PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14 Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 Query: 370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684 G + N+E +G G LARA+G A +I+ + T +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_BARVE (50S ribosomal protein L2, chloroplastic OS=Barbarea verna GN=rpl2-A PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14 Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 Query: 370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684 G + N+E +G G LARA+G A +I+ + T +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_ARAHI (50S ribosomal protein L2, chloroplastic OS=Arabis hirsuta GN=rpl2-A PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14 Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 Query: 370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684 G + N+E +G G LARA+G A +I+ + T +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RL2_PROMH (50S ribosomal protein L2 OS=Proteus mirabilis (strain HI4320) GN=rplB PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.542e-14 Identity = 47/111 (42.34%), Postives = 61/111 (54.95%), Query Frame = -2 Query: 352 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 684 G+ V NVE G G LAR++G Y I++ D ++L SG + IPS CRA IG+V + L KAG + R P VRG AMNPV+HPHGGG ++ G Sbjct: 138 GSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTIRLRSGEMRKIPSDCRATIGEVGNSEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_GOSHI (50S ribosomal protein L2, chloroplastic OS=Gossypium hirsutum GN=rpl2-A PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.542e-14 Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 Query: 370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684 G + N+E +G G LARA+G A +I+ + T +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 136 GTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233 The following BLAST results are available for this feature:
BLAST of CN189306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189306 ID=CN189306; Name=CN189306; organism=Citrus sinensis; type=EST; length=688bpback to top |