CN189306

Overview
NameCN189306
Unique NameCN189306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_NASOF (50S ribosomal protein L2, chloroplastic OS=Nasturtium officinale GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 
Query:  370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684
            G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
[Close]
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_LOBMA (50S ribosomal protein L2, chloroplastic OS=Lobularia maritima GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 
Query:  370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684
            G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
[Close]
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_LEPVR (50S ribosomal protein L2, chloroplastic OS=Lepidium virginicum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 
Query:  370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684
            G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
[Close]
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_DRANE (50S ribosomal protein L2, chloroplastic OS=Draba nemorosa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 
Query:  370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684
            G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
[Close]
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_CRUWA (50S ribosomal protein L2, chloroplastic OS=Crucihimalaya wallichii GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 
Query:  370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684
            G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
[Close]
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_CARPA (50S ribosomal protein L2, chloroplastic OS=Carica papaya GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 
Query:  370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684
            G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
[Close]
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_BARVE (50S ribosomal protein L2, chloroplastic OS=Barbarea verna GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 
Query:  370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684
            G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
[Close]
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_ARAHI (50S ribosomal protein L2, chloroplastic OS=Arabis hirsuta GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 
Query:  370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684
            G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
[Close]
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RL2_PROMH (50S ribosomal protein L2 OS=Proteus mirabilis (strain HI4320) GN=rplB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.542e-14
Identity = 47/111 (42.34%), Postives = 61/111 (54.95%), Query Frame = -2 
Query:  352 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 684
            G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + IPS CRA IG+V       + L KAG +       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  138 GSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTIRLRSGEMRKIPSDCRATIGEVGNSEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241
[Close]
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_GOSHI (50S ribosomal protein L2, chloroplastic OS=Gossypium hirsutum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.542e-14
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 
Query:  370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684
            G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  136 GTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
The following BLAST results are available for this feature:
BLAST of CN189306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_NASOF2.712e-1442.2050S ribosomal protein L2, chloroplastic OS=Nasturt... [more]
RK2_LOBMA2.712e-1442.2050S ribosomal protein L2, chloroplastic OS=Lobular... [more]
RK2_LEPVR2.712e-1442.2050S ribosomal protein L2, chloroplastic OS=Lepidiu... [more]
RK2_DRANE2.712e-1442.2050S ribosomal protein L2, chloroplastic OS=Draba n... [more]
RK2_CRUWA2.712e-1442.2050S ribosomal protein L2, chloroplastic OS=Crucihi... [more]
RK2_CARPA2.712e-1442.2050S ribosomal protein L2, chloroplastic OS=Carica ... [more]
RK2_BARVE2.712e-1442.2050S ribosomal protein L2, chloroplastic OS=Barbare... [more]
RK2_ARAHI2.712e-1442.2050S ribosomal protein L2, chloroplastic OS=Arabis ... [more]
RL2_PROMH3.542e-1442.3450S ribosomal protein L2 OS=Proteus mirabilis (str... [more]
RK2_GOSHI3.542e-1442.2050S ribosomal protein L2, chloroplastic OS=Gossypi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K12_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189306 ID=CN189306; Name=CN189306; organism=Citrus sinensis; type=EST; length=688bp
TTTTTTTTTTTTTTTCGATGAAGGCATCCATTAATATATCCAAAAATATC
AAAATCAACTAAAGTTTAGGATAAGAGCAAATTAAGCTAAACTTTAAGCC
AACATAATTTAACATCAGGATCATCCCAAAGATCCAAATCTGAACAAATT
TTTCTAAGGTAATGATGCAGCAGGAAAAGTAAAATGACAGATCGCGATAG
AGAGACGATTTGTTGTAACACAAAGGATTTAAGCCTTGTCGGCCTTGGCT
GCAGTGGCAGCAGCTTGTCCTCTGAGCCGACCAGTCCTCCTGGCTGCAAT
AAGACCAACCTTCTGGCCAGGAGGAGCATCACGCCTAACAGTGCTAGCAT
GACCAATGTGCTGGTGGTTACCTCCTCCATGAGGATGCTCCACTGGGTTC
ATGGCCACACCACGCACCTTAGGCCAGCAGTTTCGCTTCACTCTGAATTT
GTGGTATGCATTACCAGCTTTGAGAAGGGGCTTCTCAGTCCTCCCTCCGC
CGGCAACCTGCCCAATCATCGCTCTGCAGCCACTTGGAATAATCTTTTTG
GCACCAGATGGAAGCTTGACCCTGGTGGTGTCATTATCGGGGTTATGACT
GATGATAACGGCATAATCACCAGAAGCTCTAGCCAAAACACCGCGATCAC
CAACATGATGCTCAACGTTGCAAACAACAGCTCCTTCA
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