CN189306

Overview
NameCN189306
Unique NameCN189306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:395..1082. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RL2_METM7 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.407e-33
Identity = 71/130 (54.62%), Postives = 85/130 (65.38%), Query Frame = -2
Query:  298 EGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 687
            EG  V N+E   GD G L R+ G YA ++SH  D   T VKLPSG  K++   CRA +G VAGGGR EKP +KAG  +H    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R   PG+KVG I
Sbjct:  105 EGIPVYNIETIPGDGGKLVRSGGCYAHVVSH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKHHSLSAKAIAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHI 232          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RL2_METM6 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.407e-33
Identity = 71/130 (54.62%), Postives = 85/130 (65.38%), Query Frame = -2
Query:  298 EGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 687
            EG  V N+E   GD G L R+ G YA ++SH  D   T VKLPSG  K++   CRA +G VAGGGR EKP +KAG  +H    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R   PG+KVG I
Sbjct:  105 EGIPVYNIETIPGDGGKLVRSGGCYAHVVSH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKHHSLSAKAIAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHI 232          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RL2_METTH (50S ribosomal protein L2P OS=Methanobacterium thermoautotrophicum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.811e-33
Identity = 72/130 (55.38%), Postives = 85/130 (65.38%), Query Frame = -2
Query:  298 EGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 687
            EG  + N+E+  GD G L R+SG YA +I+H  D D   ++LPSG  K +   CRA +G VAGGGR EKP LKAG  YH  R K      VRGVAMN V+HPHGGGN QH G  +TV R APPG+KVG I
Sbjct:  105 EGTPIYNIENRPGDGGKLVRSSGTYASLITH--DADKAVIELPSGELKALNPQCRATVGVVAGGGRREKPFLKAGKKYHALRAKGKKSVTVRGVAMNAVDHPHGGGNRQHPGRPTTVSRHAPPGRKVGSI 232          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RL2_METJA (50S ribosomal protein L2P OS=Methanocaldococcus jannaschii GN=rpl2p PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.811e-33
Identity = 75/131 (57.25%), Postives = 87/131 (66.41%), Query Frame = -2
Query:  298 EGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV-RRDAPPGQKVGLI 687
            EG  V N+E   GD G L RA G YA I++H  D + T VKLPSG  K + S CRA IG VAGGGR EKP +KAG  YH  + K   WP+VRGVAMN V+HP GGG HQH G  +TV R+  PPG+KVG I
Sbjct:  105 EGIPVFNIETVPGDGGKLVRAGGCYAHILTH--DGERTYVKLPSGHIKALHSMCRATIGVVAGGGRKEKPFVKAGKKYHAMKAKAVKWPRVRGVAMNAVDHPFGGGRHQHTGKPTTVSRKKVPPGRKVGHI 233          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RL2_HYPBU (50S ribosomal protein L2P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.811e-33
Identity = 72/130 (55.38%), Postives = 89/130 (68.46%), Query Frame = -2
Query:  298 EGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 687
            EG  V N+E   GD G L RA G YA+I+  +   + T ++LPSG  K +P+  RA IG VAG GR EKPLLKAG AY+K+  K + WP+VRGVAMN V HPHGGG+HQ     +TV R+APPG+KVG I
Sbjct:  101 EGTQVYNIEIRPGDGGKLVRAYGTYAIILGRS--GNKTIIQLPSGKVKEVPNDARATIGIVAGAGRLEKPLLKAGAAYYKWSAKPHVWPRVRGVAMNAVNHPHGGGSHQSPSFPTTVSRNAPPGRKVGHI 228          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RL2_SULTO (50S ribosomal protein L2P OS=Sulfolobus tokodaii GN=rpl2p PE=3 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.919e-32
Identity = 70/130 (53.85%), Postives = 85/130 (65.38%), Query Frame = -2
Query:  298 EGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 687
            EG ++ N+E   GD G  AR++G Y V++      D   VKL S     + S  RA++G VAGGG TEKPLLKAGN Y K++VK   WP VRGVAMN V HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  100 EGTIISNIEKTRGDGGKFARSAGTYGVVVGKT--GDKVLVKLSSEKIAQVSSNARAIVGVVAGGGVTEKPLLKAGNNYWKYKVKAKKWPHVRGVAMNAVSHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RL2_METS3 (50S ribosomal protein L2P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.425e-32
Identity = 70/130 (53.85%), Postives = 88/130 (67.69%), Query Frame = -2
Query:  298 EGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 687
            EG  + ++E+  GD G   R+SG YA +I+H  D + + V+LPSG  K +   CRA IG VAGGGR EKP LKAGN +H ++ K   +  VRGVAMN V+HPHGGGN QH G  +TV R APPG+KVG I
Sbjct:  105 EGTPIYDIENTPGDGGRFVRSSGTYASLITH--DANQSVVELPSGELKYLNPRCRASIGVVAGGGRKEKPFLKAGNRWHAYKAKGKKFMTVRGVAMNAVDHPHGGGNRQHPGRPTTVSRHAPPGRKVGSI 232          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RL2_CALMQ (50S ribosomal protein L2P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32
Identity = 71/128 (55.47%), Postives = 88/128 (68.75%), Query Frame = -2
Query:  304 EGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 687
            EG +VCN+E  VGD G  AR+SG Y V++ H   + TT V+LPSG    + S  RA IG VAGGGR EKP +KAGN YH+ R K   +PKVRG AM+   HPHGGG+HQ  G  + V+++APPGQKVG
Sbjct:  105 EGTMVCNIEKRVGDGGKYARSSGTYGVVMIHR--DSTTLVQLPSGRMIEVDSRARATIGIVAGGGRIEKPFVKAGNKYHRARTKAWKYPKVRGKAMSAYAHPHGGGSHQQGG--TPVKKNAPPGQKVG 228          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RL2_METST (50S ribosomal protein L2P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.441e-31
Identity = 69/130 (53.08%), Postives = 84/130 (64.62%), Query Frame = -2
Query:  298 EGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 687
            EG  V N+E++ GD G   R+SG YA +I+H  D D T +++PSG  K      RA +G VAGGGR EKP LKAGN YH  + K      VRGVAMN V+HPHGGGN QH G  +T+ R AP G+KVG I
Sbjct:  105 EGTPVFNIENNPGDGGKFVRSSGTYASLITH--DVDKTMIEMPSGELKAFNPRSRATVGVVAGGGRKEKPFLKAGNRYHALKAKGKKMMTVRGVAMNAVDHPHGGGNRQHPGRPTTISRHAPAGRKVGSI 232          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RL2_METBF (50S ribosomal protein L2P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.441e-31
Identity = 65/130 (50.00%), Postives = 89/130 (68.46%), Query Frame = -2
Query:  298 EGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 687
            EG  +CN+E    D G   R+SG YA +++H  +++ T V +PSG  K +   CRA++G VAGGGR ++P LKAG  YHK + +   +P+V GVAMNPV+HP GGG  +H G  +TV R+APPG+KVGLI
Sbjct:  102 EGFFICNIESKPNDGGRFVRSSGVYATVVTH--ESNRTAVAMPSGNIKWLNPKCRAVVGIVAGGGRVDRPWLKAGKKYHKMKTRAAKYPRVSGVAMNPVDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLI 229          
The following BLAST results are available for this feature:
BLAST of CN189306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_METM73.407e-3354.6250S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METM63.407e-3354.6250S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METTH5.811e-3355.3850S ribosomal protein L2P OS=Methanobacterium ther... [more]
RL2_METJA5.811e-3357.2550S ribosomal protein L2P OS=Methanocaldococcus ja... [more]
RL2_HYPBU5.811e-3355.3850S ribosomal protein L2P OS=Hyperthermus butylicu... [more]
RL2_SULTO4.919e-3253.8550S ribosomal protein L2P OS=Sulfolobus tokodaii G... [more]
RL2_METS36.425e-3253.8550S ribosomal protein L2P OS=Methanobrevibacter sm... [more]
RL2_CALMQ8.391e-3255.4750S ribosomal protein L2P OS=Caldivirga maquilinge... [more]
RL2_METST2.441e-3153.0850S ribosomal protein L2P OS=Methanosphaera stadtm... [more]
RL2_METBF2.441e-3150.0050S ribosomal protein L2P OS=Methanosarcina barker... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K12_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189306 ID=CN189306; Name=CN189306; organism=Citrus sinensis; type=EST; length=688bp
TTTTTTTTTTTTTTTCGATGAAGGCATCCATTAATATATCCAAAAATATC
AAAATCAACTAAAGTTTAGGATAAGAGCAAATTAAGCTAAACTTTAAGCC
AACATAATTTAACATCAGGATCATCCCAAAGATCCAAATCTGAACAAATT
TTTCTAAGGTAATGATGCAGCAGGAAAAGTAAAATGACAGATCGCGATAG
AGAGACGATTTGTTGTAACACAAAGGATTTAAGCCTTGTCGGCCTTGGCT
GCAGTGGCAGCAGCTTGTCCTCTGAGCCGACCAGTCCTCCTGGCTGCAAT
AAGACCAACCTTCTGGCCAGGAGGAGCATCACGCCTAACAGTGCTAGCAT
GACCAATGTGCTGGTGGTTACCTCCTCCATGAGGATGCTCCACTGGGTTC
ATGGCCACACCACGCACCTTAGGCCAGCAGTTTCGCTTCACTCTGAATTT
GTGGTATGCATTACCAGCTTTGAGAAGGGGCTTCTCAGTCCTCCCTCCGC
CGGCAACCTGCCCAATCATCGCTCTGCAGCCACTTGGAATAATCTTTTTG
GCACCAGATGGAAGCTTGACCCTGGTGGTGTCATTATCGGGGTTATGACT
GATGATAACGGCATAATCACCAGAAGCTCTAGCCAAAACACCGCGATCAC
CAACATGATGCTCAACGTTGCAAACAACAGCTCCTTCA
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