CN189306

Overview
NameCN189306
Unique NameCN189306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RL2_NANEQ (50S ribosomal protein L2P OS=Nanoarchaeum equitans GN=rpl2p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.439e-24
Identity = 58/130 (44.62%), Postives = 78/130 (60.00%), Query Frame = -2
Query:  298 EGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 687
            EG  +  +E++ GD G L RASGD+A+++      D   V+LPSG  K + +  RA+IG +AGGGR EKP +KAGN Y+    +   WP V GV  N  +HP GG  H +     TV + APPG+KVG I
Sbjct:  102 EGTKIYMLENNPGDGGKLVRASGDFALLVQKL--GDKVIVQLPSGQFKTLSANARAVIGVIAGGGRKEKPFVKAGNKYYWASSRNRHWPVVNGVKKNASDHPFGGKRHSNHSKPFTVSKWAPPGRKVGYI 229          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_MORIN (50S ribosomal protein L2, chloroplastic OS=Morus indica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15
Identity = 47/109 (43.12%), Postives = 62/109 (56.88%), Query Frame = -2
Query:  370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684
            G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++IP  C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLIPKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_PELHO (50S ribosomal protein L2, chloroplastic OS=Pelargonium hortorum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.217e-14
Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = -2
Query:  370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 684
            G  + N+E  +G  G LARA+G  A +IS   +  +  VKLPSG  ++I   C A +GQV   G   K L +AG+   ++  KR   P VRGVAMNPV+HPHGGG
Sbjct:  136 GTAIHNIEITLGKGGQLARAAGAVAKLISK--EGKSAAVKLPSGEVRLISQNCSATVGQVGNVGVNRKSLGRAGSK--RWLGKR---PVVRGVAMNPVDHPHGGG 233          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_CUCSA (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.217e-14
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2
Query:  370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684
            G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RL2_BORRA (50S ribosomal protein L2 OS=Borrelia recurrentis (strain A1) GN=rplB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14
Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = -2
Query:  352 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 684
            G +V N+E ++G  G L R +G YA+II+   D D   VKLPSG  ++I   C A +G+V         + KAG +  ++  +R   PKVRGVAMNP++HPHGGG  +  G
Sbjct:  140 GKMVHNIELNIGKGGQLVRGAGGYAMIIAS--DGDYVTVKLPSGEMRMIFKKCIATLGEVGNEDYMNVSIGKAGKS--RWLGRR---PKVRGVAMNPIDHPHGGGEGKTSG 243          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RL2_BORDL (50S ribosomal protein L2 OS=Borrelia duttonii (strain Ly) GN=rplB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14
Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = -2
Query:  352 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 684
            G +V N+E ++G  G L R +G YA+II+   D D   VKLPSG  ++I   C A +G+V         + KAG +  ++  +R   PKVRGVAMNP++HPHGGG  +  G
Sbjct:  140 GKMVHNIELNIGKGGQLVRGAGGYAMIIAS--DGDYVTVKLPSGEMRMIFKKCIATLGEVGNEDYMNVSIGKAGKS--RWLGRR---PKVRGVAMNPIDHPHGGGEGKTSG 243          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_POPTR (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2
Query:  370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684
            G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  136 GTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_CITSI (50S ribosomal protein L2, chloroplastic OS=Citrus sinensis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2
Query:  370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684
            G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_BUXMI (50S ribosomal protein L2, chloroplastic OS=Buxus microphylla GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2
Query:  370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684
            G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  134 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 231          
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_AETGR (50S ribosomal protein L2, chloroplastic OS=Aethionema grandiflora GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2
Query:  370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684
            G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--IKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
The following BLAST results are available for this feature:
BLAST of CN189306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_NANEQ6.439e-2444.6250S ribosomal protein L2P OS=Nanoarchaeum equitans... [more]
RK2_MORIN3.203e-1543.1250S ribosomal protein L2, chloroplastic OS=Morus i... [more]
RK2_PELHO1.217e-1445.7150S ribosomal protein L2, chloroplastic OS=Pelargo... [more]
RK2_CUCSA1.217e-1442.2050S ribosomal protein L2, chloroplastic OS=Cucumis... [more]
RL2_BORRA1.590e-1442.3450S ribosomal protein L2 OS=Borrelia recurrentis (... [more]
RL2_BORDL1.590e-1442.3450S ribosomal protein L2 OS=Borrelia duttonii (str... [more]
RK2_POPTR1.590e-1442.2050S ribosomal protein L2, chloroplastic OS=Populus... [more]
RK2_CITSI1.590e-1442.2050S ribosomal protein L2, chloroplastic OS=Citrus ... [more]
RK2_BUXMI1.590e-1442.2050S ribosomal protein L2, chloroplastic OS=Buxus m... [more]
RK2_AETGR1.590e-1442.2050S ribosomal protein L2, chloroplastic OS=Aethion... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K12_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189306 ID=CN189306; Name=CN189306; organism=Citrus sinensis; type=EST; length=688bp
TTTTTTTTTTTTTTTCGATGAAGGCATCCATTAATATATCCAAAAATATC
AAAATCAACTAAAGTTTAGGATAAGAGCAAATTAAGCTAAACTTTAAGCC
AACATAATTTAACATCAGGATCATCCCAAAGATCCAAATCTGAACAAATT
TTTCTAAGGTAATGATGCAGCAGGAAAAGTAAAATGACAGATCGCGATAG
AGAGACGATTTGTTGTAACACAAAGGATTTAAGCCTTGTCGGCCTTGGCT
GCAGTGGCAGCAGCTTGTCCTCTGAGCCGACCAGTCCTCCTGGCTGCAAT
AAGACCAACCTTCTGGCCAGGAGGAGCATCACGCCTAACAGTGCTAGCAT
GACCAATGTGCTGGTGGTTACCTCCTCCATGAGGATGCTCCACTGGGTTC
ATGGCCACACCACGCACCTTAGGCCAGCAGTTTCGCTTCACTCTGAATTT
GTGGTATGCATTACCAGCTTTGAGAAGGGGCTTCTCAGTCCTCCCTCCGC
CGGCAACCTGCCCAATCATCGCTCTGCAGCCACTTGGAATAATCTTTTTG
GCACCAGATGGAAGCTTGACCCTGGTGGTGTCATTATCGGGGTTATGACT
GATGATAACGGCATAATCACCAGAAGCTCTAGCCAAAACACCGCGATCAC
CAACATGATGCTCAACGTTGCAAACAACAGCTCCTTCA
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