CN189306
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RL2_NANEQ (50S ribosomal protein L2P OS=Nanoarchaeum equitans GN=rpl2p PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.439e-24 Identity = 58/130 (44.62%), Postives = 78/130 (60.00%), Query Frame = -2 Query: 298 EGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 687 EG + +E++ GD G L RASGD+A+++ D V+LPSG K + + RA+IG +AGGGR EKP +KAGN Y+ + WP V GV N +HP GG H + TV + APPG+KVG I Sbjct: 102 EGTKIYMLENNPGDGGKLVRASGDFALLVQKL--GDKVIVQLPSGQFKTLSANARAVIGVIAGGGRKEKPFVKAGNKYYWASSRNRHWPVVNGVKKNASDHPFGGKRHSNHSKPFTVSKWAPPGRKVGYI 229
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_MORIN (50S ribosomal protein L2, chloroplastic OS=Morus indica GN=rpl2-A PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15 Identity = 47/109 (43.12%), Postives = 62/109 (56.88%), Query Frame = -2 Query: 370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684 G + N+E +G G LARA+G A +I+ + T +KLPSG ++IP C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLIPKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_PELHO (50S ribosomal protein L2, chloroplastic OS=Pelargonium hortorum GN=rpl2-A PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.217e-14 Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = -2 Query: 370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 684 G + N+E +G G LARA+G A +IS + + VKLPSG ++I C A +GQV G K L +AG+ ++ KR P VRGVAMNPV+HPHGGG Sbjct: 136 GTAIHNIEITLGKGGQLARAAGAVAKLISK--EGKSAAVKLPSGEVRLISQNCSATVGQVGNVGVNRKSLGRAGSK--RWLGKR---PVVRGVAMNPVDHPHGGG 233
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_CUCSA (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.217e-14 Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 Query: 370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684 G + N+E +G G LARA+G A +I+ + T +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RL2_BORRA (50S ribosomal protein L2 OS=Borrelia recurrentis (strain A1) GN=rplB PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14 Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = -2 Query: 352 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 684 G +V N+E ++G G L R +G YA+II+ D D VKLPSG ++I C A +G+V + KAG + ++ +R PKVRGVAMNP++HPHGGG + G Sbjct: 140 GKMVHNIELNIGKGGQLVRGAGGYAMIIAS--DGDYVTVKLPSGEMRMIFKKCIATLGEVGNEDYMNVSIGKAGKS--RWLGRR---PKVRGVAMNPIDHPHGGGEGKTSG 243
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RL2_BORDL (50S ribosomal protein L2 OS=Borrelia duttonii (strain Ly) GN=rplB PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14 Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = -2 Query: 352 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 684 G +V N+E ++G G L R +G YA+II+ D D VKLPSG ++I C A +G+V + KAG + ++ +R PKVRGVAMNP++HPHGGG + G Sbjct: 140 GKMVHNIELNIGKGGQLVRGAGGYAMIIAS--DGDYVTVKLPSGEMRMIFKKCIATLGEVGNEDYMNVSIGKAGKS--RWLGRR---PKVRGVAMNPIDHPHGGGEGKTSG 243
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_POPTR (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa GN=rpl2-A PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14 Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 Query: 370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684 G + N+E +G G LARA+G A +I+ + T +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 136 GTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_CITSI (50S ribosomal protein L2, chloroplastic OS=Citrus sinensis GN=rpl2-A PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14 Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 Query: 370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684 G + N+E +G G LARA+G A +I+ + T +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_BUXMI (50S ribosomal protein L2, chloroplastic OS=Buxus microphylla GN=rpl2-A PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14 Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 Query: 370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684 G + N+E +G G LARA+G A +I+ + T +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 134 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 231
BLAST of CN189306 vs. ExPASy Swiss-Prot
Match: RK2_AETGR (50S ribosomal protein L2, chloroplastic OS=Aethionema grandiflora GN=rpl2-A PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14 Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -2 Query: 370 GAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 684 G + N+E +G G LARA+G A +I+ + T +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 136 GTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--IKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233 The following BLAST results are available for this feature:
BLAST of CN189306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189306 ID=CN189306; Name=CN189306; organism=Citrus sinensis; type=EST; length=688bpback to top |