CN189295

Overview
NameCN189295
Unique NameCN189295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12
Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = -1
Query:  347 EIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVV 634
            E++ TF LVYTV++ A D K+      + ++AP+ IGF V    LA     G  +NPA S G A++      W++HW++WVGP  GA +AAL + ++
Sbjct:  148 EMVMTFGLVYTVYATAVDPKKG----DLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTGV---WENHWVYWVGPLAGAAIAALVYDII 237          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = -1
Query:  344 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 664
            G + G     EI  T   V  +F+  D +R+ R   V     L +GF++ L HL  +  TG G+NPARS   AI+    R + +HW++WVGP +GAGL +L +  ++
Sbjct:  124 GVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 223          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = -1
Query:  344 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 664
            G + G     EI  T   V  +F+  D +R+ R   V     L +GF++ L HL  +  TG G+NPARS   AI+    R + +HW++WVGP +GAGL +L +  ++
Sbjct:  124 GVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 223          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.180e-12
Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = -1
Query:  338 VAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAA-LYHQVVIRA 673
            VA G     G+  EII TF LVYTV++ A D K+ +    + ++AP+ IGF V    LA  P +G  +NPARS G A+       +  +WI+W GP +G  LA  +Y  V I A
Sbjct:  133 VAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGS----LGVIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV---ASGDFSQNWIYWAGPLIGGALAGFIYGDVFITA 239          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.180e-12
Identity = 39/114 (34.21%), Postives = 59/114 (51.75%), Query Frame = -1
Query:  332 VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIP 673
            + H   +   L  E++ TF LVYTV++    +RS        +APL IG       LA  P  G  +NPAR+ G A++      W  HW++W+GP +GAG+A   ++ V+   P
Sbjct:  142 LGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSGGGD----IAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALV---GWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQP 248          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.180e-12
Identity = 38/107 (35.51%), Postives = 58/107 (54.21%), Query Frame = -1
Query:  344 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 664
            G + G     EI  T   V  +F+  D +R+ R   V     L +GF++ L HL  +  TG G+NPARS   AI+    R + +HW++WVGP +G GL +L +  ++
Sbjct:  124 GVSVGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPIIGGGLGSLLYDFLL 223          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBVU (Aquaporin Z OS=Vibrio vulnificus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.180e-12
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = -1
Query:  347 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVV 664
            GY+    L  E++ T + +  +  ATD +           AP+ IG  + L+HL +IP+T T +NPARS G A +Y  D      W+FWV P +GA L A+ ++++
Sbjct:  127 GYSLTSALVTEVVMTMMFLLVILGATDQRAPQG------FAPIAIGLCLTLIHLISIPVTNTSVNPARSTGVA-LYVGDWATAQLWLFWVAPILGALLGAVAYKLI 225          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = -1
Query:  347 DGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVV 649
            +G+  EII TF LVYTV++ A D K+ +  +    +AP+ IGF V    L   P +G  +NPARS G A+       + + WI+WVGP VG GLA L ++ V
Sbjct:  140 EGVVMEIIVTFGLVYTVYATAADPKKGSLGT----IAPIAIGFIVGANILVAGPFSGGSMNPARSFGPAVASGD---YTNIWIYWVGPLVGGGLAGLVYRYV 234          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12
Identity = 44/111 (39.64%), Postives = 61/111 (54.95%), Query Frame = -1
Query:  344 VAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 673
            V+ G   G     E++ TF L+YTV+ +A D KR A    V  +APL IG  V    L   P  G  +NPA + G +++  +   W  HWIFWVGP +GA LAAL ++  +
Sbjct:  135 VSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA----VSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWQ---WHQHWIFWVGPLLGAALAALVYEYAV 238          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: AQP_DROME (Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.312e-12
Identity = 34/98 (34.69%), Postives = 55/98 (56.12%), Query Frame = -1
Query:  341 EIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIR 634
            E + TF+LV+ V + +D  R      +   APL +G A+   HL  I ++G  +NPARS G A++      W  HW++WVGP  G  LA + ++++ +
Sbjct:  142 EALITFILVFVVKAVSDPGRQ----DIKGSAPLAVGLAIAAGHLCAIKLSGASMNPARSFGPAVVQGV---WTYHWVYWVGPIAGGLLAGIIYRLIFK 232          
The following BLAST results are available for this feature:
BLAST of CN189295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
TIP12_MAIZE3.201e-1239.18Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
MIP_SHEEP3.201e-1236.45Lens fiber major intrinsic protein OS=Ovis aries G... [more]
MIP_BOVIN3.201e-1236.45Lens fiber major intrinsic protein OS=Bos taurus G... [more]
TIP_ANTMA4.180e-1240.35Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP32_ORYSJ4.180e-1234.21Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
MIP_CANFA4.180e-1235.51Lens fiber major intrinsic protein OS=Canis famili... [more]
AQPZ_VIBVU4.180e-1234.91Aquaporin Z OS=Vibrio vulnificus GN=aqpZ PE=3 SV=1[more]
TIP22_ORYSJ5.459e-1242.16Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIPA_PHAVU7.130e-1239.64Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
AQP_DROME9.312e-1234.69Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K04_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189295 ID=CN189295; Name=CN189295; organism=Citrus sinensis; type=EST; length=676bp
TTTTTTTTTTTTTTTTTAAAGAACTAGTTTTGTCCATATTATTACCAAGA
TGACATTGCACAAATCCATAGCCATACAAATGTACAAAGTGACAGCGCCC
ACCTACTTAACCATGGGCCCATCCGTCATCATCATCCACCTCTCTTCAAA
ATTAAAAAAAAAAAAAACGTTTTAAGGAAGGAAAACAGAAAAGCAGGCCC
AGGTCCAGCACCAGCAGATTTGAACAAAGGACTAATTAATATTTTATAAT
ACACATAAGCAAACCAGCAACAGCCATAAACAAATGCAGGTGCAATCACG
AACGTTGATGAAGCGATCAGCTTCATTTGAAGGGAATGGCTCTGATCACG
ACTTGGTGGTACAAAGCTGCGAGTCCAGCTCCAACGAATGGTCCCACCCA
AAAAATCCAGTGGTCATCCCAACCGCGGTCCTTGTTGTAAATGATTGCAG
CTCCAAGACTCCTCGCTGGGTTGATGCCAGTTCCGGTAATTGGGATAGTG
GCCAAGTGAACCAAAAACACAGCGAACCCAATTGGCAGAGGAGCCAAAAT
AGGAACATGAGAGTCCCTGGCGCTCCGTTTGGCATCAGTGGCAGAAAAAA
CTGTGTAGACAAGAACAAAAGTACCAATAATCTCGGCACCAAGACCATCA
CCCTTGGTGTAGCCATGAGCTACAAC
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