CN189294

Overview
NameCN189294
Unique NameCN189294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 1.989e-63
Identity = 117/132 (88.64%), Postives = 119/132 (90.15%), Query Frame = -3 
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDRDRV EAR+EL RML EDELRDAVLLVF NKQDLPNAMNA EIT KLG H  RQRHWYIQSTCAT GEGLYEGLDWLSN I N+
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNQIRNQ 180
[Close]
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF2_RAT (ADP-ribosylation factor 2 OS=Rattus norvegicus GN=Arf2 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.091e-61
Identity = 113/132 (85.61%), Postives = 120/132 (90.91%), Query Frame = -3 
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFVNKQDLPNAMNA EIT KLG H  RQR+WYIQ+TCAT G+GLYEGLDWLSN + N+
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
[Close]
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF2_MOUSE (ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 PE=1 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 1.091e-61
Identity = 113/132 (85.61%), Postives = 120/132 (90.91%), Query Frame = -3 
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFVNKQDLPNAMNA EIT KLG H  RQR+WYIQ+TCAT G+GLYEGLDWLSN + N+
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
[Close]
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF2_BOVIN (ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.091e-61
Identity = 113/132 (85.61%), Postives = 120/132 (90.91%), Query Frame = -3 
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFVNKQDLPNAMNA EIT KLG H  RQR+WYIQ+TCAT G+GLYEGLDWLSN + N+
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
[Close]
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF3_TAKRU (ADP-ribosylation factor 3 OS=Takifugu rubripes GN=arf3 PE=3 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 9.240e-61
Identity = 111/132 (84.09%), Postives = 118/132 (89.39%), Query Frame = -3 
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF NKQDLPNAMNA EIT KLG H  R R+WYIQ+TCAT G+GLYEGLDWL+N + NK
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF3_RAT (ADP-ribosylation factor 3 OS=Rattus norvegicus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 9.240e-61
Identity = 111/132 (84.09%), Postives = 118/132 (89.39%), Query Frame = -3 
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF NKQDLPNAMNA EIT KLG H  R R+WYIQ+TCAT G+GLYEGLDWL+N + NK
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF3_PONAB (ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 PE=2 SV=3)

HSP 1 Score: 233.032 bits (593), Expect = 9.240e-61
Identity = 111/132 (84.09%), Postives = 118/132 (89.39%), Query Frame = -3 
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF NKQDLPNAMNA EIT KLG H  R R+WYIQ+TCAT G+GLYEGLDWL+N + NK
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF3_MOUSE (ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 9.240e-61
Identity = 111/132 (84.09%), Postives = 118/132 (89.39%), Query Frame = -3 
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF NKQDLPNAMNA EIT KLG H  R R+WYIQ+TCAT G+GLYEGLDWL+N + NK
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF3_HUMAN (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 9.240e-61
Identity = 111/132 (84.09%), Postives = 118/132 (89.39%), Query Frame = -3 
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF NKQDLPNAMNA EIT KLG H  R R+WYIQ+TCAT G+GLYEGLDWL+N + NK
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 233.032 bits (593), Expect = 9.240e-61
Identity = 111/132 (84.09%), Postives = 118/132 (89.39%), Query Frame = -3 
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF NKQDLPNAMNA EIT KLG H  R R+WYIQ+TCAT G+GLYEGLDWL+N + NK
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
The following BLAST results are available for this feature:
BLAST of CN189294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
ARF1_SOLTU1.989e-6388.64ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]
ARF2_RAT1.091e-6185.61ADP-ribosylation factor 2 OS=Rattus norvegicus GN=... [more]
ARF2_MOUSE1.091e-6185.61ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 ... [more]
ARF2_BOVIN1.091e-6185.61ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE... [more]
ARF3_TAKRU9.240e-6184.09ADP-ribosylation factor 3 OS=Takifugu rubripes GN=... [more]
ARF3_RAT9.240e-6184.09ADP-ribosylation factor 3 OS=Rattus norvegicus GN=... [more]
ARF3_PONAB9.240e-6184.09ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 ... [more]
ARF3_MOUSE9.240e-6184.09ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 ... [more]
ARF3_HUMAN9.240e-6184.09ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]
ARF3_BOVIN9.240e-6184.09ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189294 ID=CN189294; Name=CN189294; organism=Citrus sinensis; type=EST; length=625bp
TTTTTTTTTTTCCTTTTTATTTTTTTTTTTTGAGGAAAGATAAACATTCC
AGAATTATTCTGAAGCTACCAAAAACAAATCTCAACGTTTGCAAGGGAAA
CAACAAACACAGTAAAACGGGCAACGAAGCTATTACAGGAAGGAAAGCAA
GAACACTTGAGATGGGTTGTTAACTCTGTATTTCAGCAGTTGCGGCAACC
CAAAACTCAAAATTTAGTTGTCTATGCCTTGTTTGCAATGTTGTTTGAAA
GCCAATCAAGTCCCTCATACAGCCCTTCACCAAAAGTGGCACATGTGCTC
TGGATATACCAGTGGCGCTGGCGAAAAAAGTGAAAGCCAAGCTTGGCAGT
TATCTCAACAGCATTCATTGCATTTGGAAGATCTTGCTTGTTAACAAATA
CAAGCAGCACAGCATCTCTCAATTCATCCTCATTCAACATTCTGTGCAAC
TCATCCCTAGCTTCTACCACACGGTCGCGATCATTACTGTCAACCACAAA
GATGAGTCCTTGGGTGGTTTGGAAATAATGTCTCCACAAAGGTCGGATCT
TGTCTTGACCCCCGACATCCCAGACAGTAAAGCTGATGTTCTTATACTCA
ACGGTCTCTACATTAAATCCAATGG
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