CN189294

Overview
NameCN189294
Unique NameCN189294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL5A_RAT (ADP-ribosylation factor-like protein 5A OS=Rattus norvegicus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.759e-27
Identity = 55/129 (42.64%), Postives = 81/129 (62.79%), Query Frame = -3
Query:  237 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNI 623
            IG NVE +   N  F +WD+GGQ+ +R  W  Y+  T+ +I VVDS DR+R+   R+EL++ML  ++LR A LL+F NKQD+   M   EI+  L     +   W+IQ+ CA  GEGL +GL+W+ + +
Sbjct:   48 IGSNVEEIVVNNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL5A_HUMAN (ADP-ribosylation factor-like protein 5A OS=Homo sapiens GN=ARL5A PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.759e-27
Identity = 55/129 (42.64%), Postives = 81/129 (62.79%), Query Frame = -3
Query:  237 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNI 623
            IG NVE +   N  F +WD+GGQ+ +R  W  Y+  T+ +I VVDS DR+R+   R+EL++ML  ++LR A LL+F NKQD+   M   EI+  L     +   W+IQ+ CA  GEGL +GL+W+ + +
Sbjct:   48 IGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL5A_BOVIN (ADP-ribosylation factor-like protein 5A OS=Bos taurus GN=ARL5A PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.759e-27
Identity = 55/129 (42.64%), Postives = 81/129 (62.79%), Query Frame = -3
Query:  237 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNI 623
            IG NVE +   N  F +WD+GGQ+ +R  W  Y+  T+ +I VVDS DR+R+   R+EL++ML  ++LR A LL+F NKQD+   M   EI+  L     +   W+IQ+ CA  GEGL +GL+W+ + +
Sbjct:   48 IGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKGCMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL2_CAEBR (ADP-ribosylation factor-like protein 2 OS=Caenorhabditis briggsae GN=evl-20.1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.297e-27
Identity = 53/132 (40.15%), Postives = 84/132 (63.64%), Query Frame = -3
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            +GF+++TV +K+    +WDVGGQ  +R  W++YF++T  LI+VVDS+DR+R+ +  +EL ++L E+ L  A LLV  NK DLP A++   I   L     +  HW I S CA  GE L + + WL +++ ++
Sbjct:   48 LGFDIKTVHFKDFQLNLWDVGGQKSLRSYWKNYFESTDALIWVVDSSDRERLTQCSEELKKLLQEERLSGASLLVLANKSDLPGAIDVNSIAQVLELQSIKTHHWKIFSCCALSGERLVQAMTWLCDDVGSR 179          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL3_CAEEL (ADP-ribosylation factor-like protein 3 OS=Caenorhabditis elegans GN=arl-3 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.684e-27
Identity = 58/129 (44.96%), Postives = 83/129 (64.34%), Query Frame = -3
Query:  237 GFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNI 620
            GFNV+TV    +I   VWD+GGQ  IRP W +Y++    LIFV+DSND+ R  E   EL  +L+E++LR   +L+F NKQDL  A ++ EIT KL     R R W+IQ+  A   EG+ +G+ W+++N+
Sbjct:   50 GFNVKTVAAMGDIRLNVWDIGGQRSIRPYWSNYYENIDTLIFVIDSNDKKRFDEMNIELGELLDEEKLRKVPVLIFANKQDLVTAASSEEITRKLNLDLLRDRTWHIQACSALKNEGINDGITWVASNL 178          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL2_DROME (ADP-ribosylation factor-like protein 2 OS=Drosophila melanogaster GN=Arf84F PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.540e-26
Identity = 56/132 (42.42%), Postives = 79/132 (59.85%), Query Frame = -3
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            +GFN++T+E+   +  +WDVGGQ  +R  WR+YF++T GL++VVDS DR R+     EL  +L E+ L  A LLV  NKQDLP A+++ EI   L        HW +    A  GE L   +DWL  +IA +
Sbjct:   48 LGFNIKTLEHNGYTLNMWDVGGQKSLRSYWRNYFESTDGLVWVVDSADRMRLESCGQELQVLLQEERLAGATLLVLCNKQDLPGALSSNEIKEILHLEDITTHHWLVAGVSAVTGEKLLSSMDWLIADIAKR 179          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF5_ARATH (Probable ADP-ribosylation factor At2g18390 OS=Arabidopsis thaliana GN=At2g18390 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.540e-26
Identity = 57/133 (42.86%), Postives = 82/133 (61.65%), Query Frame = -3
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFF-RQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            +GFN++T+ Y+  +  +WDVGGQ  IR  WR+YF+ T GL++VVDS+D  R+ + + EL  +L E+ L  + LL+  NKQD+  A+   EI   L      + RHW I    A  GEGL EG DWL  +IA++
Sbjct:   48 LGFNIKTIIYQKYTLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLAGSSLLILANKQDIQGALTPDEIGKVLNLESMDKSRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL2_DICDI (ADP-ribosylation factor-like protein 2 OS=Dictyostelium discoideum GN=arl2 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.390e-26
Identity = 52/132 (39.39%), Postives = 80/132 (60.61%), Query Frame = -3
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            +GFN++T+ YK     +WD+GGQ  +R  WR+Y++    +I+V+DS+D  R+ + + EL ++L E++   A  LVF NKQDL  AM + EI+  L        HW I S  A  G GL EG+DW+  +I ++
Sbjct:   48 LGFNIQTLMYKEYKLNIWDIGGQKTLRSYWRNYYEENDAVIWVIDSSDIRRIDDCKFELKKLLEEEKFAGASFLVFANKQDLDGAMTSEEISKYLDLEQLNTHHWEIMSCSAVTGLGLEEGIDWVVKDIVSR 179          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL4C_MOUSE (ADP-ribosylation factor-like protein 4C OS=Mus musculus GN=Arl4c PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.790e-25
Identity = 61/138 (44.20%), Postives = 82/138 (59.42%), Query Frame = -3
Query:  228 IGFNVETVEYKN-----ISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFH-FFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFN E ++  N     IS   WDVGGQ+K+RPLW+ Y + T G+I+VVDS D DR+ EA+ ELH++    E +   LLV  NKQDLP ++   EI  +L  H       +++Q  CA  GEGL EG+D L   I  +
Sbjct:   45 IGFNTEKIKLSNGTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMILKR 182          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL4C_HUMAN (ADP-ribosylation factor-like protein 4C OS=Homo sapiens GN=ARL4C PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.790e-25
Identity = 61/138 (44.20%), Postives = 82/138 (59.42%), Query Frame = -3
Query:  228 IGFNVETVEYKN-----ISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFH-FFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFN E ++  N     IS   WDVGGQ+K+RPLW+ Y + T G+I+VVDS D DR+ EA+ ELH++    E +   LLV  NKQDLP ++   EI  +L  H       +++Q  CA  GEGL EG+D L   I  +
Sbjct:   45 IGFNTEKIKLSNGTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMILKR 182          
The following BLAST results are available for this feature:
BLAST of CN189294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
ARL5A_RAT1.759e-2742.64ADP-ribosylation factor-like protein 5A OS=Rattus ... [more]
ARL5A_HUMAN1.759e-2742.64ADP-ribosylation factor-like protein 5A OS=Homo sa... [more]
ARL5A_BOVIN1.759e-2742.64ADP-ribosylation factor-like protein 5A OS=Bos tau... [more]
ARL2_CAEBR2.297e-2740.15ADP-ribosylation factor-like protein 2 OS=Caenorha... [more]
ARL3_CAEEL6.684e-2744.96ADP-ribosylation factor-like protein 3 OS=Caenorha... [more]
ARL2_DROME2.540e-2642.42ADP-ribosylation factor-like protein 2 OS=Drosophi... [more]
ARF5_ARATH2.540e-2642.86Probable ADP-ribosylation factor At2g18390 OS=Arab... [more]
ARL2_DICDI7.390e-2639.39ADP-ribosylation factor-like protein 2 OS=Dictyost... [more]
ARL4C_MOUSE4.790e-2544.20ADP-ribosylation factor-like protein 4C OS=Mus mus... [more]
ARL4C_HUMAN4.790e-2544.20ADP-ribosylation factor-like protein 4C OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189294 ID=CN189294; Name=CN189294; organism=Citrus sinensis; type=EST; length=625bp
TTTTTTTTTTTCCTTTTTATTTTTTTTTTTTGAGGAAAGATAAACATTCC
AGAATTATTCTGAAGCTACCAAAAACAAATCTCAACGTTTGCAAGGGAAA
CAACAAACACAGTAAAACGGGCAACGAAGCTATTACAGGAAGGAAAGCAA
GAACACTTGAGATGGGTTGTTAACTCTGTATTTCAGCAGTTGCGGCAACC
CAAAACTCAAAATTTAGTTGTCTATGCCTTGTTTGCAATGTTGTTTGAAA
GCCAATCAAGTCCCTCATACAGCCCTTCACCAAAAGTGGCACATGTGCTC
TGGATATACCAGTGGCGCTGGCGAAAAAAGTGAAAGCCAAGCTTGGCAGT
TATCTCAACAGCATTCATTGCATTTGGAAGATCTTGCTTGTTAACAAATA
CAAGCAGCACAGCATCTCTCAATTCATCCTCATTCAACATTCTGTGCAAC
TCATCCCTAGCTTCTACCACACGGTCGCGATCATTACTGTCAACCACAAA
GATGAGTCCTTGGGTGGTTTGGAAATAATGTCTCCACAAAGGTCGGATCT
TGTCTTGACCCCCGACATCCCAGACAGTAAAGCTGATGTTCTTATACTCA
ACGGTCTCTACATTAAATCCAATGG
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