CN189294

Overview
NameCN189294
Unique NameCN189294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL5C_MOUSE (ADP-ribosylation factor-like protein 5C OS=Mus musculus GN=Arl5c PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.820e-24
Identity = 50/125 (40.00%), Postives = 78/125 (62.40%), Query Frame = -3
Query:  249 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWL 623
            IG NVE +  +   F +WD+GGQ+ +R  W  Y+   + +I V+DS DR+R++  R+EL++ML  + L++A +L+F NKQD+ ++M   EI+  L     +   W+IQ  CA  GEGL  GL W+
Sbjct:   48 IGSNVEEIVLRKTHFLMWDLGGQEALRSTWDTYYSNAEFVILVIDSTDRNRLLTTREELYKMLAHEALQNASVLIFANKQDVKDSMTTAEISQFLTLSAIKDHPWHIQGCCALTGEGLPAGLQWM 172          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL6_PONAB (ADP-ribosylation factor-like protein 6 OS=Pongo abelii GN=ARL6 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.105e-24
Identity = 54/131 (41.22%), Postives = 87/131 (66.41%), Query Frame = -3
Query:  237 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNI 623
            IGF++E  +  ++SFTV+D+ GQ + R LW HY++  Q +IFV+DS+DR R+V A++EL  +LN  ++  R   +L F NK DL +A+ +V+++  L     + + W+I ++ A  GEGL EG+DWL + I
Sbjct:   51 IGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 181          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL6_HUMAN (ADP-ribosylation factor-like protein 6 OS=Homo sapiens GN=ARL6 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.105e-24
Identity = 54/131 (41.22%), Postives = 87/131 (66.41%), Query Frame = -3
Query:  237 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNI 623
            IGF++E  +  ++SFTV+D+ GQ + R LW HY++  Q +IFV+DS+DR R+V A++EL  +LN  ++  R   +L F NK DL +A+ +V+++  L     + + W+I ++ A  GEGL EG+DWL + I
Sbjct:   51 IGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 181          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL14_HUMAN (ADP-ribosylation factor-like protein 14 OS=Homo sapiens GN=ARL14 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.055e-24
Identity = 52/123 (42.28%), Postives = 79/123 (64.23%), Query Frame = -3
Query:  261 IGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGF-HFFRQRHWYIQSTCATFGEGLYEG 623
            IGFNVE +E  +N S TVWDVGGQ+K+R +W  Y + T GL++VVDS D+ R+ E++ +   +L  + +++  +++  NKQD+P A+ A +IT           R+WY+Q  CA  GEGL +G
Sbjct:   45 IGFNVEMIELERNFSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNVPVVLLANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQG 167          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL4A_RAT (ADP-ribosylation factor-like protein 4A OS=Rattus norvegicus GN=Arl4a PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.916e-24
Identity = 56/137 (40.88%), Postives = 83/137 (60.58%), Query Frame = -3
Query:  228 GFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGF-HFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 620
            GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+  NKQDL N+++  EI   L          W++Q TCA  G+GL EGL+ L + I  +
Sbjct:   53 GFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKR 189          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL4A_MOUSE (ADP-ribosylation factor-like protein 4A OS=Mus musculus GN=Arl4a PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.916e-24
Identity = 56/137 (40.88%), Postives = 83/137 (60.58%), Query Frame = -3
Query:  228 GFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGF-HFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 620
            GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+  NKQDL N+++  EI   L          W++Q TCA  G+GL EGL+ L + I  +
Sbjct:   53 GFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKR 189          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL4A_HUMAN (ADP-ribosylation factor-like protein 4A OS=Homo sapiens GN=ARL4A PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 6.916e-24
Identity = 56/137 (40.88%), Postives = 83/137 (60.58%), Query Frame = -3
Query:  228 GFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGF-HFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 620
            GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+  NKQDL N+++  EI   L          W++Q TCA  G+GL EGL+ L + I  +
Sbjct:   53 GFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKR 189          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL4A_BOVIN (ADP-ribosylation factor-like protein 4A OS=Bos taurus GN=ARL4A PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.916e-24
Identity = 56/137 (40.88%), Postives = 83/137 (60.58%), Query Frame = -3
Query:  228 GFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGF-HFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 620
            GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+  NKQDL N+++  EI   L          W++Q TCA  G+GL EGL+ L + I  +
Sbjct:   53 GFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKR 189          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL6_BOVIN (ADP-ribosylation factor-like protein 6 OS=Bos taurus GN=ARL6 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.033e-24
Identity = 52/131 (39.69%), Postives = 87/131 (66.41%), Query Frame = -3
Query:  237 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNI 623
            IGF+++  +  ++SFTV+D+ GQ + R LW HY++  Q +IFV+DS+D+ R+V A++EL  +LN  ++  R   +L F NK DL +A+ +V+++  L     + + W+I ++ A  GEGL EG+DWL + I
Sbjct:   51 IGFSIQKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDKLRMVVAKEELRTLLNHPDIKHRRIPILFFANKMDLRDALTSVKVSQLLCLEDIKDKPWHICASDAIKGEGLQEGVDWLQDQI 181          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL6_MOUSE (ADP-ribosylation factor-like protein 6 OS=Mus musculus GN=Arl6 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.180e-23
Identity = 52/131 (39.69%), Postives = 87/131 (66.41%), Query Frame = -3
Query:  237 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNI 623
            IGF++E  +  ++SFTV+D+ GQ + R LW HY++  Q +IFV+DS+D+ R+V A++EL  +LN  ++  R   +L F NK DL +++ +V+++  L     + + W+I ++ A  GEGL EG+DWL + I
Sbjct:   51 IGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKDGQAIIFVIDSSDKLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDSVTSVKVSQLLCLESIKDKPWHICASDAIKGEGLQEGVDWLQDQI 181          
The following BLAST results are available for this feature:
BLAST of CN189294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
ARL5C_MOUSE1.820e-2440.00ADP-ribosylation factor-like protein 5C OS=Mus mus... [more]
ARL6_PONAB3.105e-2441.22ADP-ribosylation factor-like protein 6 OS=Pongo ab... [more]
ARL6_HUMAN3.105e-2441.22ADP-ribosylation factor-like protein 6 OS=Homo sap... [more]
ARL14_HUMAN4.055e-2442.28ADP-ribosylation factor-like protein 14 OS=Homo sa... [more]
ARL4A_RAT6.916e-2440.88ADP-ribosylation factor-like protein 4A OS=Rattus ... [more]
ARL4A_MOUSE6.916e-2440.88ADP-ribosylation factor-like protein 4A OS=Mus mus... [more]
ARL4A_HUMAN6.916e-2440.88ADP-ribosylation factor-like protein 4A OS=Homo sa... [more]
ARL4A_BOVIN6.916e-2440.88ADP-ribosylation factor-like protein 4A OS=Bos tau... [more]
ARL6_BOVIN9.033e-2439.69ADP-ribosylation factor-like protein 6 OS=Bos taur... [more]
ARL6_MOUSE1.180e-2339.69ADP-ribosylation factor-like protein 6 OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189294 ID=CN189294; Name=CN189294; organism=Citrus sinensis; type=EST; length=625bp
TTTTTTTTTTTCCTTTTTATTTTTTTTTTTTGAGGAAAGATAAACATTCC
AGAATTATTCTGAAGCTACCAAAAACAAATCTCAACGTTTGCAAGGGAAA
CAACAAACACAGTAAAACGGGCAACGAAGCTATTACAGGAAGGAAAGCAA
GAACACTTGAGATGGGTTGTTAACTCTGTATTTCAGCAGTTGCGGCAACC
CAAAACTCAAAATTTAGTTGTCTATGCCTTGTTTGCAATGTTGTTTGAAA
GCCAATCAAGTCCCTCATACAGCCCTTCACCAAAAGTGGCACATGTGCTC
TGGATATACCAGTGGCGCTGGCGAAAAAAGTGAAAGCCAAGCTTGGCAGT
TATCTCAACAGCATTCATTGCATTTGGAAGATCTTGCTTGTTAACAAATA
CAAGCAGCACAGCATCTCTCAATTCATCCTCATTCAACATTCTGTGCAAC
TCATCCCTAGCTTCTACCACACGGTCGCGATCATTACTGTCAACCACAAA
GATGAGTCCTTGGGTGGTTTGGAAATAATGTCTCCACAAAGGTCGGATCT
TGTCTTGACCCCCGACATCCCAGACAGTAAAGCTGATGTTCTTATACTCA
ACGGTCTCTACATTAAATCCAATGG
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