CN189294

Overview
NameCN189294
Unique NameCN189294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL_SCHPO (ADP-ribosylation factor-like protein alp41 OS=Schizosaccharomyces pombe GN=alp41 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.704e-22
Identity = 47/128 (36.72%), Postives = 80/128 (62.50%), Query Frame = -3
Query:  237 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNI 620
            GF + T+E + + FT+WD+GGQ  +R  W++YF++T+ +I+VVDS D  R+ E R+ L  +L E++L    +LV  NK D+  A+++ EI+  L    ++  HW I S  A  G  + + + WL+N++
Sbjct:   49 GFQIRTLEVEGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDL 176          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL5C_HUMAN (Putative ADP-ribosylation factor-like protein 5C OS=Homo sapiens GN=ARL5C PE=2 SV=4)

HSP 1 Score: 103.605 bits (257), Expect = 8.455e-22
Identity = 49/130 (37.69%), Postives = 76/130 (58.46%), Query Frame = -3
Query:  234 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIA 623
            IG NVE +      F +WD+   + +  +W  Y+  T+ +I V+DS DRDR++  R+EL++ML  + L+DA +L+F NKQD+ ++M  VEI+  L     +   W+IQ  CA   EGL   L W+ +  A
Sbjct:   48 IGSNVEEIILPKTHFFMWDIVRPEALSFIWNTYYSNTEFIILVIDSTDRDRLLTTREELYKMLAHEALQDASVLIFANKQDVKDSMRMVEISHFLTLSTIKDHSWHIQGCCALTREGLPARLQWMESQAA 177          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL14_MOUSE (ADP-ribosylation factor-like protein 14 OS=Mus musculus GN=Arl14 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.442e-21
Identity = 51/124 (41.13%), Postives = 80/124 (64.52%), Query Frame = -3
Query:  261 IGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVD-SNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGF-HFFRQRHWYIQSTCATFGEGLYEG 623
            IGFNVE V+ ++ ++ TVWDVGGQ+K+R +W  Y +  QGL++VVD S  + R+ ++R E   +L  + +++  +++  NKQDLP A++A +IT           R+WY+Q  CA  GEGL +G
Sbjct:   45 IGFNVEMVQLQSSLTLTVWDVGGQEKMRTVWDCYCENAQGLMYVVDCSEGKKRLEDSRKEFKHILKNEHIKNTPVVILANKQDLPGALSAEDITRMFKVKKLCSNRNWYVQPCCAVTGEGLDDG 168          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL6_CAEBR (ADP-ribosylation factor-like protein 6 OS=Caenorhabditis briggsae GN=arl-6 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.213e-21
Identity = 54/139 (38.85%), Postives = 80/139 (57.55%), Query Frame = -3
Query:  213 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANKA*TTK 623
            +G  V     +N+SF  +D+ GQ K R  W  YF ++QG+IFV+DS+DR R+   +DEL  +L+  ++  R   +++  NK D+P AM   +ITA LG +  R   W I STCA  G+GL + +  LS+ I     T K
Sbjct:   51 VGHVVTNFSTQNLSFHAFDMAGQMKYRSTWESYFHSSQGVIFVLDSSDRVRMELLKDELWLVLDHKDVASRGIPVVILANKMDIPGAMTCADITAALGLNLHRSGTWSIHSTCALTGDGLDKAMQQLSSEIQKYLETRK 189          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL4D_MOUSE (ADP-ribosylation factor-like protein 4D OS=Mus musculus GN=Arl4d PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.196e-21
Identity = 55/137 (40.15%), Postives = 80/137 (58.39%), Query Frame = -3
Query:  228 GFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGF-HFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 620
            GFN E +       + I+F VWDVGGQ+K+RPLWR Y + T GL+FVVDS + +R+ EA+ ELHR+    + +   +LV  NKQD P A++A E+  +L           ++Q+  A  G GL +GL+ L   I  +
Sbjct:   54 GFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDSAEIERLEEAKVELHRISKASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQACSAVDGLGLQQGLERLYEMILKR 190          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL4D_PONAB (ADP-ribosylation factor-like protein 4D OS=Pongo abelii GN=ARL4D PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.157e-21
Identity = 54/137 (39.42%), Postives = 79/137 (57.66%), Query Frame = -3
Query:  228 GFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGF-HFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 620
            GFN E +       + I+F VWDVGGQ+K+RPLWR Y + T GL+FVVD+ + +R+ EA+ ELHR+    + +   +LV  NKQD P A++A E+  +L           ++Q   A  G GL +GL+ L   I  +
Sbjct:   54 GFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRISRASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGLERLYEMILKR 190          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL4D_HUMAN (ADP-ribosylation factor-like protein 4D OS=Homo sapiens GN=ARL4D PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 7.157e-21
Identity = 54/137 (39.42%), Postives = 79/137 (57.66%), Query Frame = -3
Query:  228 GFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGF-HFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 620
            GFN E +       + I+F VWDVGGQ+K+RPLWR Y + T GL+FVVD+ + +R+ EA+ ELHR+    + +   +LV  NKQD P A++A E+  +L           ++Q   A  G GL +GL+ L   I  +
Sbjct:   54 GFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRISRASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGLERLYEMILKR 190          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL6_CAEEL (ADP-ribosylation factor-like protein 6 OS=Caenorhabditis elegans GN=arl-6 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21
Identity = 51/131 (38.93%), Postives = 77/131 (58.78%), Query Frame = -3
Query:  237 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNI 623
            +G  V     +N+SF  +D+ GQ K R  W  YF ++QG+IFV+DS+DR R+   +DEL  ++   ++  R   +++  NK D+P AM A +IT  LG + +R   W I STCA  G+GL + +  LS  I
Sbjct:   51 VGHVVTNFSTQNLSFHAFDMAGQMKYRSTWESYFHSSQGVIFVLDSSDRLRMELLKDELMMVMEHKDVVSRGIPIVILANKMDIPGAMTASDITVALGLNLYRSGTWSIHSTCALTGDGLDKAMQQLSAEI 181          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL4D_BOVIN (ADP-ribosylation factor-like protein 4D OS=Bos taurus GN=ARL4D PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.595e-20
Identity = 54/137 (39.42%), Postives = 78/137 (56.93%), Query Frame = -3
Query:  228 GFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGF-HFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 620
            GFN E +       + I+F VWDVGGQ+K+RPLWR Y + T GL+FVVD+ + +R+ EA+ ELHR+    + +   +LV  NKQD P A++A E+  +L           ++Q   A  G GL  GL+ L   I  +
Sbjct:   53 GFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRISRASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELATATLTHVQGCSAVDGLGLQPGLERLYEMILKR 189          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL3_PONAB (ADP-ribosylation factor-like protein 3 OS=Pongo abelii GN=ARL3 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.595e-20
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = -3
Query:  228 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 620
            GFN+++V+ +     VWD+GGQ KIRP W++YF+ T  L                 EL  +L E++L    +L+F NKQDL  A  A EI   L  H  R R W IQS  A  GEG+ +G++W+  N+  K
Sbjct:   50 GFNIKSVQSQGFKLNVWDIGGQRKIRPYWKNYFENTDIL-----------------ELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 163          
The following BLAST results are available for this feature:
BLAST of CN189294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
ARL_SCHPO1.704e-2236.72ADP-ribosylation factor-like protein alp41 OS=Schi... [more]
ARL5C_HUMAN8.455e-2237.69Putative ADP-ribosylation factor-like protein 5C O... [more]
ARL14_MOUSE1.442e-2141.13ADP-ribosylation factor-like protein 14 OS=Mus mus... [more]
ARL6_CAEBR3.213e-2138.85ADP-ribosylation factor-like protein 6 OS=Caenorha... [more]
ARL4D_MOUSE4.196e-2140.15ADP-ribosylation factor-like protein 4D OS=Mus mus... [more]
ARL4D_PONAB7.157e-2139.42ADP-ribosylation factor-like protein 4D OS=Pongo a... [more]
ARL4D_HUMAN7.157e-2139.42ADP-ribosylation factor-like protein 4D OS=Homo sa... [more]
ARL6_CAEEL9.348e-2138.93ADP-ribosylation factor-like protein 6 OS=Caenorha... [more]
ARL4D_BOVIN1.595e-2039.42ADP-ribosylation factor-like protein 4D OS=Bos tau... [more]
ARL3_PONAB1.595e-2038.93ADP-ribosylation factor-like protein 3 OS=Pongo ab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189294 ID=CN189294; Name=CN189294; organism=Citrus sinensis; type=EST; length=625bp
TTTTTTTTTTTCCTTTTTATTTTTTTTTTTTGAGGAAAGATAAACATTCC
AGAATTATTCTGAAGCTACCAAAAACAAATCTCAACGTTTGCAAGGGAAA
CAACAAACACAGTAAAACGGGCAACGAAGCTATTACAGGAAGGAAAGCAA
GAACACTTGAGATGGGTTGTTAACTCTGTATTTCAGCAGTTGCGGCAACC
CAAAACTCAAAATTTAGTTGTCTATGCCTTGTTTGCAATGTTGTTTGAAA
GCCAATCAAGTCCCTCATACAGCCCTTCACCAAAAGTGGCACATGTGCTC
TGGATATACCAGTGGCGCTGGCGAAAAAAGTGAAAGCCAAGCTTGGCAGT
TATCTCAACAGCATTCATTGCATTTGGAAGATCTTGCTTGTTAACAAATA
CAAGCAGCACAGCATCTCTCAATTCATCCTCATTCAACATTCTGTGCAAC
TCATCCCTAGCTTCTACCACACGGTCGCGATCATTACTGTCAACCACAAA
GATGAGTCCTTGGGTGGTTTGGAAATAATGTCTCCACAAAGGTCGGATCT
TGTCTTGACCCCCGACATCCCAGACAGTAAAGCTGATGTTCTTATACTCA
ACGGTCTCTACATTAAATCCAATGG
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