CN189294

Overview
NameCN189294
Unique NameCN189294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL8_DROME (ADP-ribosylation factor-like protein 8 OS=Drosophila melanogaster GN=Gie PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.441e-15
Identity = 36/125 (28.80%), Postives = 68/125 (54.40%), Query Frame = -3
Query:  249 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWL 623
            +GFN+  +   N++  VWD+GGQ + R +W  Y +    ++++VD+ D D++  +R+ELH +L++ +L    +LV  NK+DLP A++   +  ++     + R     S      + +   L WL
Sbjct:   53 VGFNMRKITRGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADLDKLEASRNELHSLLDKPQLAGIPVLVLGNKRDLPGALDETGLIERMNLSSIQDREICCYSISCKEKDNIDITLQWL 177          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL8A_MOUSE (ADP-ribosylation factor-like protein 8A OS=Mus musculus GN=Arl8a PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.869e-15
Identity = 34/125 (27.20%), Postives = 70/125 (56.00%), Query Frame = -3
Query:  249 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWL 623
            +GFN+  +   N++  +WD+GGQ + R +W  Y +    ++++VD+ D++++  +++ELH +L++ +L+   +LV  NK+DL  A++  E+  K+     + R     S      + +   L WL
Sbjct:   53 VGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLAGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 177          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: SAR1_YEAST (Small COPII coat GTPase SAR1 OS=Saccharomyces cerevisiae GN=SAR1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.913e-14
Identity = 45/131 (34.35%), Postives = 64/131 (48.85%), Query Frame = -3
Query:  237 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGF-------HFFRQRHWYIQSTCATFGEGLYEGLDWLSNNI 608
            E +   NI FT +D+GG  + R LW+ YF    G++F+VD+ D +R  EAR EL  + N  EL+D   ++  NK D PNA++  E+ + LG            QR   +         G  E   WLS  I
Sbjct:   60 EELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: SAR1_CANGA (Small COPII coat GTPase SAR1 OS=Candida glabrata GN=SAR1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.913e-14
Identity = 46/131 (35.11%), Postives = 63/131 (48.09%), Query Frame = -3
Query:  237 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGF-------HFFRQRHWYIQSTCATFGEGLYEGLDWLSNNI 608
            E +   NI FT +D+GG  + R LW+ YF    G++F+VDS D DR  EAR EL  + N  EL+D   ++  NK D  NA++  E+ + LG            QR   +         G  E   WLS  I
Sbjct:   59 EELAIGNIKFTTFDLGGHVQARRLWKDYFPEVNGIVFLVDSADPDRFDEARVELDALFNITELKDVPFVILGNKIDAANAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 189          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: AR13B_DANRE (ADP-ribosylation factor-like protein 13B OS=Danio rerio GN=arl13b PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.804e-14
Identity = 44/139 (31.65%), Postives = 70/139 (50.36%), Query Frame = -3
Query:  234 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRH---WYIQSTCATFGEG------LYEGLDWLSNNIA 623
            +GF+   ++      T++D+GG  +IR +W++Y+  + G++FVVDS+D  R+ E RD +  +L    +    +LV  NKQD   AM   +I   L        +     I+   A  G G      +  GL+WL NNIA
Sbjct:   53 VGFSKVDLKQGKFEVTIFDLGGGKRIRGIWKNYYSESYGVVFVVDSSDVQRIQETRDTMAEVLRHPRIAGKPVLVLANKQDQDGAMAEADIIETLSLEKLVNENKCLCQIEPCSAVLGYGKKVDKSIKNGLNWLLNNIA 191          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARD1_CAEEL (Putative GTP-binding protein ard-1 homolog OS=Caenorhabditis elegans GN=arc-1 PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 4.968e-14
Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = -3
Query:  381 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQD 623
            IGFN+ET+ YKN     WDVGG  K+R LW+HY+   Q + +V+D    +R  EA  EL+R++++  +    ++V VN++D
Sbjct:  404 IGFNIETIHYKNYRLNFWDVGGLPKLRHLWKHYYSNAQAIFYVIDGYAVERFSEAIKELNRVMSDPLVGTCPVIVAVNRKD 484          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL3_YEAST (ADP-ribosylation factor-like protein 3 OS=Saccharomyces cerevisiae GN=ARL3 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.107e-13
Identity = 43/130 (33.08%), Postives = 71/130 (54.62%), Query Frame = -3
Query:  249 IGFNVET--VEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAM---NAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWL 623
            +G NV T  V+ K I    WDVGGQ+ +R +W  Y+    G+IF+VDS+DR+R+ E    L  ++ ++E+    +L+  NKQD  + M   +  E+  K+  H    R   +    A  GEG+ + ++W+
Sbjct:   55 VGQNVATIPVDSKQI-LKFWDVGGQESLRSMWSEYYSLCHGIIFIVDSSDRERLDECSTTLQSVVMDEEIEGVPILMLANKQDRQDRMEVQDIKEVFNKIAEH-ISARDSRVLPISALTGEGVKDAIEWM 182          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: SAR1_MAGGR (Small COPII coat GTPase SAR1 OS=Magnaporthe grisea GN=SAR1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.174e-13
Identity = 34/93 (36.56%), Postives = 55/93 (59.14%), Query Frame = -3
Query:  330 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFH 608
            E +   N+ FT +D+GG  + R LW+ YF    G++F+VD+ D DR  EA+ EL  +L+ +EL     ++  NK D P A++  E+  +LG +
Sbjct:   57 EELAIGNVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHDRFPEAKAELDALLSMEELAKVPFVILGNKIDHPEAISEEELRHQLGLY 149          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: SAR1_USTMA (Small COPII coat GTPase SAR1 OS=Ustilago maydis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.370e-13
Identity = 33/93 (35.48%), Postives = 53/93 (56.99%), Query Frame = -3
Query:  330 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFH 608
            E +    + FT +D+GG  + R LW+ YF    G++F+VD+ D +R  EAR EL  +L+ +EL     L+  NK D P A++  E+   +G +
Sbjct:   57 EELAIGQVKFTTYDLGGHQQARRLWKDYFPEVDGIVFLVDTQDHERFAEARAELDALLSIEELSSVPFLILGNKIDAPGAVSEEELRQAIGLY 149          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: SAR1_PHANO (Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodorum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.370e-13
Identity = 33/93 (35.48%), Postives = 57/93 (61.29%), Query Frame = -3
Query:  330 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFH 608
            E +   N+ FT +D+GG  + R LWR YF    G++F+VD+ D +R+ E++ EL  +L  +EL++   ++  NK D P A++  ++ A LG +
Sbjct:   53 EELSIGNVKFTTFDLGGHAQARRLWRDYFPEVSGIVFLVDAKDHERLNESKAELDALLAMEELKNTPFVILGNKIDHPEAVSEDQLRATLGLY 145          
The following BLAST results are available for this feature:
BLAST of CN189294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
ARL8_DROME3.441e-1528.80ADP-ribosylation factor-like protein 8 OS=Drosophi... [more]
ARL8A_MOUSE5.869e-1527.20ADP-ribosylation factor-like protein 8A OS=Mus mus... [more]
SAR1_YEAST2.913e-1434.35Small COPII coat GTPase SAR1 OS=Saccharomyces cere... [more]
SAR1_CANGA2.913e-1435.11Small COPII coat GTPase SAR1 OS=Candida glabrata G... [more]
AR13B_DANRE3.804e-1431.65ADP-ribosylation factor-like protein 13B OS=Danio ... [more]
ARD1_CAEEL4.968e-1440.74Putative GTP-binding protein ard-1 homolog OS=Caen... [more]
ARL3_YEAST1.107e-1333.08ADP-ribosylation factor-like protein 3 OS=Saccharo... [more]
SAR1_MAGGR7.174e-1336.56Small COPII coat GTPase SAR1 OS=Magnaporthe grisea... [more]
SAR1_USTMA9.370e-1335.48Small COPII coat GTPase SAR1 OS=Ustilago maydis GN... [more]
SAR1_PHANO9.370e-1335.48Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189294 ID=CN189294; Name=CN189294; organism=Citrus sinensis; type=EST; length=625bp
TTTTTTTTTTTCCTTTTTATTTTTTTTTTTTGAGGAAAGATAAACATTCC
AGAATTATTCTGAAGCTACCAAAAACAAATCTCAACGTTTGCAAGGGAAA
CAACAAACACAGTAAAACGGGCAACGAAGCTATTACAGGAAGGAAAGCAA
GAACACTTGAGATGGGTTGTTAACTCTGTATTTCAGCAGTTGCGGCAACC
CAAAACTCAAAATTTAGTTGTCTATGCCTTGTTTGCAATGTTGTTTGAAA
GCCAATCAAGTCCCTCATACAGCCCTTCACCAAAAGTGGCACATGTGCTC
TGGATATACCAGTGGCGCTGGCGAAAAAAGTGAAAGCCAAGCTTGGCAGT
TATCTCAACAGCATTCATTGCATTTGGAAGATCTTGCTTGTTAACAAATA
CAAGCAGCACAGCATCTCTCAATTCATCCTCATTCAACATTCTGTGCAAC
TCATCCCTAGCTTCTACCACACGGTCGCGATCATTACTGTCAACCACAAA
GATGAGTCCTTGGGTGGTTTGGAAATAATGTCTCCACAAAGGTCGGATCT
TGTCTTGACCCCCGACATCCCAGACAGTAAAGCTGATGTTCTTATACTCA
ACGGTCTCTACATTAAATCCAATGG
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