CN189294

Overview
NameCN189294
Unique NameCN189294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7157 contig Csv1_Contig7157:326..950. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF1_XENLA (ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf1 PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.207e-60
Identity = 111/132 (84.09%), Postives = 118/132 (89.39%), Query Frame = -3 
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF NKQDLPNAMNA EIT KLG H  R R+WYIQ+TCAT G+GLYEGLDWLSN + N+
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF1_RAT (ADP-ribosylation factor 1 OS=Rattus norvegicus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.207e-60
Identity = 111/132 (84.09%), Postives = 118/132 (89.39%), Query Frame = -3 
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF NKQDLPNAMNA EIT KLG H  R R+WYIQ+TCAT G+GLYEGLDWLSN + N+
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF1_MOUSE (ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.207e-60
Identity = 111/132 (84.09%), Postives = 118/132 (89.39%), Query Frame = -3 
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF NKQDLPNAMNA EIT KLG H  R R+WYIQ+TCAT G+GLYEGLDWLSN + N+
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF1_MACFA (ADP-ribosylation factor 1 OS=Macaca fascicularis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 232.646 bits (592), Expect = 1.207e-60
Identity = 111/132 (84.09%), Postives = 118/132 (89.39%), Query Frame = -3 
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF NKQDLPNAMNA EIT KLG H  R R+WYIQ+TCAT G+GLYEGLDWLSN + N+
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF1_HUMAN (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.207e-60
Identity = 111/132 (84.09%), Postives = 118/132 (89.39%), Query Frame = -3 
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF NKQDLPNAMNA EIT KLG H  R R+WYIQ+TCAT G+GLYEGLDWLSN + N+
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF1_BOVIN (ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE=1 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.207e-60
Identity = 111/132 (84.09%), Postives = 118/132 (89.39%), Query Frame = -3 
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF NKQDLPNAMNA EIT KLG H  R R+WYIQ+TCAT G+GLYEGLDWLSN + N+
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF_DUGJA (ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3)

HSP 1 Score: 231.491 bits (589), Expect = 2.688e-60
Identity = 110/133 (82.71%), Postives = 117/133 (87.97%), Query Frame = -3 
Query:  225 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANKA 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RV EAR+EL RMLNEDELRDAVLLVF NKQDLPNAMN  EIT KLG H  R R WYIQ+TCAT G+GLYEGLDWLS  + N++
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 181
[Close]
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF1_LOCMI (ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 2.688e-60
Identity = 109/131 (83.21%), Postives = 117/131 (89.31%), Query Frame = -3 
Query:  231 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIAN 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLL+F NKQDLPNAMNA EIT KLG H  R R+WYIQ+TCAT G+GLYEGLDWLSN + N
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 179
[Close]
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF1_DROME (ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=1 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 2.688e-60
Identity = 109/131 (83.21%), Postives = 117/131 (89.31%), Query Frame = -3 
Query:  231 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIAN 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLL+F NKQDLPNAMNA EIT KLG H  R R+WYIQ+TCAT G+GLYEGLDWLSN + N
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 179
[Close]
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF_NEUCR (ADP-ribosylation factor OS=Neurospora crassa GN=NCU08340 PE=3 SV=3)

HSP 1 Score: 230.72 bits (587), Expect = 4.586e-60
Identity = 109/133 (81.95%), Postives = 117/133 (87.97%), Query Frame = -3 
Query:  225 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANKA 623
            IGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQ TQG+IFVVDSNDRDRVVEAR+EL RMLNEDELRDA+LLVF NKQDLPNAMNA EIT KLG    RQR WYIQ+TCAT G+GL+EGLDWLS  +  K+
Sbjct:   52 IGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLSSLRQRSWYIQATCATTGDGLFEGLDWLSTELKKKS 184
The following BLAST results are available for this feature:
BLAST of CN189294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
ARF1_XENLA1.207e-6084.09ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf... [more]
ARF1_RAT1.207e-6084.09ADP-ribosylation factor 1 OS=Rattus norvegicus GN=... [more]
ARF1_MOUSE1.207e-6084.09ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 ... [more]
ARF1_MACFA1.207e-6084.09ADP-ribosylation factor 1 OS=Macaca fascicularis G... [more]
ARF1_HUMAN1.207e-6084.09ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 ... [more]
ARF1_BOVIN1.207e-6084.09ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE... [more]
ARF_DUGJA2.688e-6082.71ADP-ribosylation factor OS=Dugesia japonica PE=2 S... [more]
ARF1_LOCMI2.688e-6083.21ADP-ribosylation factor 1 OS=Locusta migratoria GN... [more]
ARF1_DROME2.688e-6083.21ADP-ribosylation factor 1 OS=Drosophila melanogast... [more]
ARF_NEUCR4.586e-6081.95ADP-ribosylation factor OS=Neurospora crassa GN=NC... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189294 ID=CN189294; Name=CN189294; organism=Citrus sinensis; type=EST; length=625bp
TTTTTTTTTTTCCTTTTTATTTTTTTTTTTTGAGGAAAGATAAACATTCC
AGAATTATTCTGAAGCTACCAAAAACAAATCTCAACGTTTGCAAGGGAAA
CAACAAACACAGTAAAACGGGCAACGAAGCTATTACAGGAAGGAAAGCAA
GAACACTTGAGATGGGTTGTTAACTCTGTATTTCAGCAGTTGCGGCAACC
CAAAACTCAAAATTTAGTTGTCTATGCCTTGTTTGCAATGTTGTTTGAAA
GCCAATCAAGTCCCTCATACAGCCCTTCACCAAAAGTGGCACATGTGCTC
TGGATATACCAGTGGCGCTGGCGAAAAAAGTGAAAGCCAAGCTTGGCAGT
TATCTCAACAGCATTCATTGCATTTGGAAGATCTTGCTTGTTAACAAATA
CAAGCAGCACAGCATCTCTCAATTCATCCTCATTCAACATTCTGTGCAAC
TCATCCCTAGCTTCTACCACACGGTCGCGATCATTACTGTCAACCACAAA
GATGAGTCCTTGGGTGGTTTGGAAATAATGTCTCCACAAAGGTCGGATCT
TGTCTTGACCCCCGACATCCCAGACAGTAAAGCTGATGTTCTTATACTCA
ACGGTCTCTACATTAAATCCAATGG
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