CN189294

Overview
NameCN189294
Unique NameCN189294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF_CRYNE (ADP-ribosylation factor OS=Cryptococcus neoformans GN=ARF PE=1 SV=3)

HSP 1 Score: 229.95 bits (585), Expect = 7.822e-60
Identity = 107/133 (80.45%), Postives = 118/133 (88.72%), Query Frame = -3
Query:  225 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANKA 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQG+IFVVDSNDR+R+ EAR+EL RML+EDELRDA+LLVF NKQDLPNAMNA EIT KLG H  RQR WYIQ+ CAT G+GLYEGL+WLS N+  K+
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRQRSWYIQAACATSGDGLYEGLEWLSANLKRKS 181          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF12_CAEEL (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis elegans GN=arf-1.2 PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 7.822e-60
Identity = 109/133 (81.95%), Postives = 117/133 (87.97%), Query Frame = -3
Query:  225 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANKA 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF NKQDLP AMNA E+T KLG H  R R WYIQ+TCAT G+GLYEGLDWLSN + N++
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNRS 181          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF12_CAEBR (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis briggsae GN=arf-1.2 PE=3 SV=3)

HSP 1 Score: 229.95 bits (585), Expect = 7.822e-60
Identity = 109/133 (81.95%), Postives = 117/133 (87.97%), Query Frame = -3
Query:  225 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANKA 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF NKQDLP AMNA E+T KLG H  R R WYIQ+TCAT G+GLYEGLDWLSN + N++
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNRS 181          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF1_SCHPO (ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe GN=arf1 PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.022e-59
Identity = 106/132 (80.30%), Postives = 117/132 (88.64%), Query Frame = -3
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEY+NISFTVWDVGGQDKIRPLWRHYFQ TQG+IFVVDSNDR+R+ EA +EL RMLNEDELRDA+LLVF NKQDLPNAMNA EIT KLG H  R R WYIQ+TCAT G+GLYEGL+WLS N+ N+
Sbjct:   49 IGFNVETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKNQ 180          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF_ASHGO (ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1 PE=3 SV=3)

HSP 1 Score: 225.713 bits (574), Expect = 1.475e-58
Identity = 105/133 (78.95%), Postives = 117/133 (87.97%), Query Frame = -3
Query:  225 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANKA 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF+ T+G+IFVVDSNDR R+ EAR+ L RMLNEDE+R+AVLLVF NKQDLP AM+A EIT KLG H  RQR WYIQ+TCAT GEGLYEGL+WLS N+ N+A
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFRNTEGIIFVVDSNDRSRIAEAREVLQRMLNEDEIRNAVLLVFANKQDLPEAMSAAEITEKLGLHSIRQRPWYIQATCATSGEGLYEGLEWLSTNLKNQA 181          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF1_DICDI (ADP-ribosylation factor 1 OS=Dictyostelium discoideum GN=arfA PE=1 SV=3)

HSP 1 Score: 222.631 bits (566), Expect = 1.249e-57
Identity = 104/133 (78.20%), Postives = 115/133 (86.47%), Query Frame = -3
Query:  225 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANKA 623
            IGFNVETVE+KNI+FTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+R+ EA DEL +MLNEDELRDAVLLVF NKQDLPNAM+  E+T KL  H  R R WYIQSTCAT G+GLYEGLDWLSN + + +
Sbjct:   49 IGFNVETVEFKNINFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEACDELTKMLNEDELRDAVLLVFCNKQDLPNAMSVAEVTDKLNLHSLRSRKWYIQSTCATSGDGLYEGLDWLSNTLTSSS 181          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF_AJECA (ADP-ribosylation factor OS=Ajellomyces capsulata GN=ARF PE=1 SV=3)

HSP 1 Score: 221.476 bits (563), Expect = 2.782e-57
Identity = 104/127 (81.89%), Postives = 113/127 (88.98%), Query Frame = -3
Query:  243 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSN 623
            IGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQ TQG+IFVVDSNDRDRVVEAR+EL RMLNEDELRDA+LLVF NKQDLPNAM+  EIT +LG     +R WYIQSTCAT G+GLYEGL+WL+N
Sbjct:   49 IGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDALLLVFANKQDLPNAMSPAEITQQLGLQSLTRRAWYIQSTCATTGDGLYEGLEWLAN 175          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF_CANAL (ADP-ribosylation factor OS=Candida albicans GN=ARF1 PE=3 SV=4)

HSP 1 Score: 219.935 bits (559), Expect = 8.095e-57
Identity = 102/129 (79.07%), Postives = 113/129 (87.60%), Query Frame = -3
Query:  237 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNI 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWR+YFQ TQG+IFVVDSNDRDR+ EAR+EL  MLNEDEL+DAVLLV  NKQDLPNAMNA EIT K+G H    R W+IQ+TCAT G+GLYEGL+WLSN +
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRYYFQNTQGIIFVVDSNDRDRINEAREELQSMLNEDELKDAVLLVLANKQDLPNAMNAAEITEKMGLHSIMNRPWFIQATCATTGDGLYEGLEWLSNQV 177          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF2_DROME (ADP-ribosylation factor 2 OS=Drosophila melanogaster GN=Arf102F PE=1 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 1.381e-56
Identity = 105/132 (79.55%), Postives = 110/132 (83.33%), Query Frame = -3
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDRDR+ EA  EL  ML EDELRDAVLLVF NKQDLPNAM A E+T KL  +  R RHW+IQSTCAT G GLYEGLDWLS  +A K
Sbjct:   49 IGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRITEAERELQNMLQEDELRDAVLLVFANKQDLPNAMTAAELTDKLRLNQLRNRHWFIQSTCATQGHGLYEGLDWLSAELAKK 180          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 213.772 bits (543), Expect = 5.801e-55
Identity = 98/133 (73.68%), Postives = 115/133 (86.47%), Query Frame = -3
Query:  225 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANKA 623
            IGFNVETV+YKNISFTVWDVGGQD+IR LWRHY++ T+G+IFV+DSNDR R+ EAR+ + RMLNEDELR+AV LVF NKQDLP AM+A EIT KLG H  R R W+IQSTCAT GEGLYEGL+WLSNN+ N++
Sbjct:   49 IGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLKNQS 181          
The following BLAST results are available for this feature:
BLAST of CN189294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
ARF_CRYNE7.822e-6080.45ADP-ribosylation factor OS=Cryptococcus neoformans... [more]
ARF12_CAEEL7.822e-6081.95ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF12_CAEBR7.822e-6081.95ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF1_SCHPO1.022e-5980.30ADP-ribosylation factor 1 OS=Schizosaccharomyces p... [more]
ARF_ASHGO1.475e-5878.95ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1... [more]
ARF1_DICDI1.249e-5778.20ADP-ribosylation factor 1 OS=Dictyostelium discoid... [more]
ARF_AJECA2.782e-5781.89ADP-ribosylation factor OS=Ajellomyces capsulata G... [more]
ARF_CANAL8.095e-5779.07ADP-ribosylation factor OS=Candida albicans GN=ARF... [more]
ARF2_DROME1.381e-5679.55ADP-ribosylation factor 2 OS=Drosophila melanogast... [more]
ARF2_YEAST5.801e-5573.68ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189294 ID=CN189294; Name=CN189294; organism=Citrus sinensis; type=EST; length=625bp
TTTTTTTTTTTCCTTTTTATTTTTTTTTTTTGAGGAAAGATAAACATTCC
AGAATTATTCTGAAGCTACCAAAAACAAATCTCAACGTTTGCAAGGGAAA
CAACAAACACAGTAAAACGGGCAACGAAGCTATTACAGGAAGGAAAGCAA
GAACACTTGAGATGGGTTGTTAACTCTGTATTTCAGCAGTTGCGGCAACC
CAAAACTCAAAATTTAGTTGTCTATGCCTTGTTTGCAATGTTGTTTGAAA
GCCAATCAAGTCCCTCATACAGCCCTTCACCAAAAGTGGCACATGTGCTC
TGGATATACCAGTGGCGCTGGCGAAAAAAGTGAAAGCCAAGCTTGGCAGT
TATCTCAACAGCATTCATTGCATTTGGAAGATCTTGCTTGTTAACAAATA
CAAGCAGCACAGCATCTCTCAATTCATCCTCATTCAACATTCTGTGCAAC
TCATCCCTAGCTTCTACCACACGGTCGCGATCATTACTGTCAACCACAAA
GATGAGTCCTTGGGTGGTTTGGAAATAATGTCTCCACAAAGGTCGGATCT
TGTCTTGACCCCCGACATCCCAGACAGTAAAGCTGATGTTCTTATACTCA
ACGGTCTCTACATTAAATCCAATGG
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