CN189294

Overview
NameCN189294
Unique NameCN189294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF5_RAT (ADP-ribosylation factor 5 OS=Rattus norvegicus GN=Arf5 PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.292e-54
Identity = 99/132 (75.00%), Postives = 111/132 (84.09%), Query Frame = -3
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RV E+ DEL +ML EDELRDAVLLVF NKQD+PNAM   E+T KLG    R R WY+Q+TCAT G GLY+GLDWLS+ ++ +
Sbjct:   49 IGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF5_MOUSE (ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.292e-54
Identity = 99/132 (75.00%), Postives = 111/132 (84.09%), Query Frame = -3
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RV E+ DEL +ML EDELRDAVLLVF NKQD+PNAM   E+T KLG    R R WY+Q+TCAT G GLY+GLDWLS+ ++ +
Sbjct:   49 IGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF5_HUMAN (ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.292e-54
Identity = 99/132 (75.00%), Postives = 111/132 (84.09%), Query Frame = -3
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RV E+ DEL +ML EDELRDAVLLVF NKQD+PNAM   E+T KLG    R R WY+Q+TCAT G GLY+GLDWLS+ ++ +
Sbjct:   49 IGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFA (ADP-ribosylation factor 1 OS=Plasmodium falciparum GN=ARF1 PE=2 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 1.292e-54
Identity = 94/131 (71.76%), Postives = 116/131 (88.55%), Query Frame = -3
Query:  231 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIAN 623
            IGFNVETVE++NISFTVWDVGGQDKIRPLWRHY+  T GLIFVVDSNDR+R+ +AR+ELHRM+NE+EL+DA++LVF NKQDLPNAM+A E+T KL  +  R+R+W+IQSTCAT G+GLYEG DWL+ ++ N
Sbjct:   49 IGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLNN 179          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF4_BOVIN (ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE=2 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 2.204e-54
Identity = 99/132 (75.00%), Postives = 110/132 (83.33%), Query Frame = -3
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+R+ E  +EL +ML EDELRDAVLL+F NKQDLPNAM   E+T KLG    R R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct:   49 IGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF4_XENLA (ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf4 PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 2.879e-54
Identity = 100/132 (75.76%), Postives = 110/132 (83.33%), Query Frame = -3
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+R+ EA +EL +ML EDELRDAVLLVF NKQDLPNAM   E+T KL     R R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct:   49 IGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEAAEELQKMLQEDELRDAVLLVFANKQDLPNAMAISEMTDKLTLQTLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF5_CHICK (ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5 PE=2 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 6.414e-54
Identity = 98/132 (74.24%), Postives = 111/132 (84.09%), Query Frame = -3
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RV E+ +EL +ML EDELRDAVLLVF NKQD+PNAM   E+T KLG    R R WY+Q+TCAT G GLY+GLDWLS+ ++ +
Sbjct:   49 IGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESAEELQKMLQEDELRDAVLLVFANKQDMPNAMVVSELTDKLGLQALRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFO (ADP-ribosylation factor 1 OS=Plasmodium falciparum (isolate NF54) GN=ARF1 PE=2 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 8.377e-54
Identity = 93/131 (70.99%), Postives = 115/131 (87.79%), Query Frame = -3
Query:  231 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIAN 623
            IGFNVETVE++NISFTVWDVGGQDKIRPLWRHY+  T GLIFVVDSNDR+R+ +AR+ LHRM+NE+EL+DA++LVF NKQDLPNAM+A E+T KL  +  R+R+W+IQSTCAT G+GLYEG DWL+ ++ N
Sbjct:   49 IGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREGLHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLNN 179          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF1_YEAST (ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae GN=ARF1 PE=1 SV=3)

HSP 1 Score: 208.764 bits (530), Expect = 1.866e-53
Identity = 96/131 (73.28%), Postives = 112/131 (85.50%), Query Frame = -3
Query:  231 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIAN 623
            IGFNVETV+YKNISFTVWDVGGQD+IR LWRHY++ T+G+IFVVDSNDR R+ EAR+ + RMLNEDELR+A  LVF NKQDLP AM+A EIT KLG H  R R W+IQ+TCAT GEGLYEGL+WLSN++ N
Sbjct:   49 IGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLKN 179          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF4_PONAB (ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 PE=2 SV=3)

HSP 1 Score: 207.223 bits (526), Expect = 5.430e-53
Identity = 97/132 (73.48%), Postives = 109/132 (82.58%), Query Frame = -3
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNI FTVWDVGGQD+IRPLW+HYFQ TQGLIFVVDSNDR+R+ E  DEL +ML  DELRDAVLL+F NKQDLPNAM   E+T KLG    R R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct:   49 IGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
The following BLAST results are available for this feature:
BLAST of CN189294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
ARF5_RAT1.292e-5475.00ADP-ribosylation factor 5 OS=Rattus norvegicus GN=... [more]
ARF5_MOUSE1.292e-5475.00ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 ... [more]
ARF5_HUMAN1.292e-5475.00ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 ... [more]
ARF1_PLAFA1.292e-5471.76ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARF4_BOVIN2.204e-5475.00ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE... [more]
ARF4_XENLA2.879e-5475.76ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf... [more]
ARF5_CHICK6.414e-5474.24ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5... [more]
ARF1_PLAFO8.377e-5470.99ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARF1_YEAST1.866e-5373.28ADP-ribosylation factor 1 OS=Saccharomyces cerevis... [more]
ARF4_PONAB5.430e-5373.48ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189294 ID=CN189294; Name=CN189294; organism=Citrus sinensis; type=EST; length=625bp
TTTTTTTTTTTCCTTTTTATTTTTTTTTTTTGAGGAAAGATAAACATTCC
AGAATTATTCTGAAGCTACCAAAAACAAATCTCAACGTTTGCAAGGGAAA
CAACAAACACAGTAAAACGGGCAACGAAGCTATTACAGGAAGGAAAGCAA
GAACACTTGAGATGGGTTGTTAACTCTGTATTTCAGCAGTTGCGGCAACC
CAAAACTCAAAATTTAGTTGTCTATGCCTTGTTTGCAATGTTGTTTGAAA
GCCAATCAAGTCCCTCATACAGCCCTTCACCAAAAGTGGCACATGTGCTC
TGGATATACCAGTGGCGCTGGCGAAAAAAGTGAAAGCCAAGCTTGGCAGT
TATCTCAACAGCATTCATTGCATTTGGAAGATCTTGCTTGTTAACAAATA
CAAGCAGCACAGCATCTCTCAATTCATCCTCATTCAACATTCTGTGCAAC
TCATCCCTAGCTTCTACCACACGGTCGCGATCATTACTGTCAACCACAAA
GATGAGTCCTTGGGTGGTTTGGAAATAATGTCTCCACAAAGGTCGGATCT
TGTCTTGACCCCCGACATCCCAGACAGTAAAGCTGATGTTCTTATACTCA
ACGGTCTCTACATTAAATCCAATGG
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