CN189294

Overview
NameCN189294
Unique NameCN189294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARFH_DICDI (ADP-ribosylation factor H OS=Dictyostelium discoideum GN=arrH PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.073e-36
Identity = 69/133 (51.88%), Postives = 94/133 (70.68%), Query Frame = -3
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFG-EGLYEGLDWLSNNIANK 623
            IGFNVET+EYKN+S TVWDVGGQ KIR LW+HY+  T  +IFVVDS DR+R+ E ++E+  +L ++EL+   +L+F NKQD+ NAMN  EI   L  +  + R WY+Q   A     G+YEG DW++N++ NK
Sbjct:   57 IGFNVETIEYKNLSMTVWDVGGQYKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDTLLIQEELKGIQILIFANKQDMNNAMNTSEIVDSLNLNSIKDRKWYVQPCSAIKSPHGIYEGFDWVANSLNNK 189          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL1_YEAST (ADP-ribosylation factor-like protein 1 OS=Saccharomyces cerevisiae GN=ARL1 PE=1 SV=4)

HSP 1 Score: 145.591 bits (366), Expect = 1.940e-34
Identity = 69/125 (55.20%), Postives = 87/125 (69.60%), Query Frame = -3
Query:  249 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWL 623
            IGFNVET+ YKN+   VWD+GGQ  IRP WR Y+  T  +IFVVDS D+DR+  A  ELH ML E+EL+DA LLVF NKQD P A++A E++ +L     + R W I ++ A  GEG+ EGLDWL
Sbjct:   50 IGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 174          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF11_CAEEL (ADP-ribosylation factor 1-like 1 OS=Caenorhabditis elegans GN=arf-1.1 PE=3 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 4.322e-34
Identity = 69/129 (53.49%), Postives = 90/129 (69.77%), Query Frame = -3
Query:  237 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNI 623
            IGFNVETV ++ I+ TVWDVGGQ KIR LW++YF  T  L+FVVDS+D +R+ EA++EL  +L E EL D+ LLVF NKQD+PNA +  E+T  L     + R W+I  T A  G+GLYEGL W+   +
Sbjct:   49 IGFNVETVTFQKITLTVWDVGGQKKIRALWKYYFPNTTTLVFVVDSSDIERIPEAKEELFSLLAEPELADSHLLVFANKQDMPNARSPAELTQLLDLGSLKNREWFICGTNAHSGQGLYEGLMWVKKQM 177          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL1_HUMAN (ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.151e-33
Identity = 67/132 (50.76%), Postives = 87/132 (65.91%), Query Frame = -3
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETV YKN+ F VWD+GGQ  IRP WR Y+  T  +I+VVDS DRDR+  ++ EL  ML E+ELR A+L+VF NKQD+  AM + E+   LG    + R W I  T AT G GL E ++WL   + ++
Sbjct:   49 IGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF3_YEAST (ADP-ribosylation factor 3 OS=Saccharomyces cerevisiae GN=ARF3 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 8.151e-33
Identity = 65/129 (50.39%), Postives = 91/129 (70.54%), Query Frame = -3
Query:  240 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFH-FFRQRHWYIQSTCATFGEGLYEGLDWLSNN 623
            +GFNVETV YKN+ F +WDVGGQ ++RPLWRHYF  T  LIFV+DS+ R+R+ EA++EL+ ++ E E+ + VLLV+ NKQDL +AM   E++  L      + + W +  + A  G+GL EGL W+SNN
Sbjct:   49 VGFNVETVTYKNVKFNMWDVGGQQRLRPLWRHYFPATTALIFVIDSSARNRMEEAKEELYSIIGEKEMENVVLLVWANKQDLKDAMKPQEVSDFLELEKNLKNQPWCVIGSNALSGQGLVEGLSWISNN 177          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL1_BOVIN (ADP-ribosylation factor-like protein 1 OS=Bos taurus GN=ARL1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.390e-32
Identity = 67/132 (50.76%), Postives = 86/132 (65.15%), Query Frame = -3
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETV YKN+ F VWD+GGQ  IRP WR Y+  T  +I+VVDS DRDR+  ++ EL  ML E+ELR A+L+VF NKQD+  AM   E+   LG    + R W I  T AT G GL E ++WL   + ++
Sbjct:   49 IGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL1_RAT (ADP-ribosylation factor-like protein 1 OS=Rattus norvegicus GN=Arl1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.816e-32
Identity = 67/132 (50.76%), Postives = 86/132 (65.15%), Query Frame = -3
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETV YKN+ F VWD+GGQ  IRP WR Y+  T  +I+VVDS DRDR+  ++ EL  ML E+ELR A+L+VF NKQD+  AM   E+   LG    + R W I  T AT G GL E ++WL   + ++
Sbjct:   49 IGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL1_MOUSE (ADP-ribosylation factor-like protein 1 OS=Mus musculus GN=Arl1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.816e-32
Identity = 67/132 (50.76%), Postives = 86/132 (65.15%), Query Frame = -3
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETV YKN+ F VWD+GGQ  IRP WR Y+  T  +I+VVDS DRDR+  ++ EL  ML E+ELR A+L+VF NKQD+  AM   E+   LG    + R W I  T AT G GL E ++WL   + ++
Sbjct:   49 IGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL1_DROME (ADP-ribosylation factor-like protein 1 OS=Drosophila melanogaster GN=Arf72A PE=1 SV=5)

HSP 1 Score: 137.887 bits (346), Expect = 4.045e-32
Identity = 66/132 (50.00%), Postives = 86/132 (65.15%), Query Frame = -3
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVE V YKN+ F VWD+GGQ  IRP WR Y+  T  +I+VVDS DRDR+  ++DEL  ML E+EL  A+L+V  NKQD+   M   E+   LG    + R + I  T AT GEGL + +DWLSN + ++
Sbjct:   48 IGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMDGCMTVAEVHHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQSR 179          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL1_CAEEL (ADP-ribosylation factor-like protein 1 OS=Caenorhabditis elegans GN=arl-1 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 6.900e-32
Identity = 69/132 (52.27%), Postives = 83/132 (62.88%), Query Frame = -3
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVE VEYKN+ F VWD+GGQ  IRP WR Y+  T  +I+VVDS DRDRV  +R EL  ML EDEL+ AVL V  NKQD+   +   E+   LG    R R   I  T A+ GEGL   +DWL+N +  K
Sbjct:   48 IGFNVEQVEYKNLKFQVWDLGGQTSIRPYWRCYYANTDAIIYVVDSADRDRVGISRQELATMLQEDELQGAVLAVLANKQDIAGCLTETEVYKALGLDALRNRTIQIFKTSASKGEGLDPAMDWLANQLQQK 179          
The following BLAST results are available for this feature:
BLAST of CN189294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
ARFH_DICDI2.073e-3651.88ADP-ribosylation factor H OS=Dictyostelium discoid... [more]
ARL1_YEAST1.940e-3455.20ADP-ribosylation factor-like protein 1 OS=Saccharo... [more]
ARF11_CAEEL4.322e-3453.49ADP-ribosylation factor 1-like 1 OS=Caenorhabditis... [more]
ARL1_HUMAN8.151e-3350.76ADP-ribosylation factor-like protein 1 OS=Homo sap... [more]
ARF3_YEAST8.151e-3350.39ADP-ribosylation factor 3 OS=Saccharomyces cerevis... [more]
ARL1_BOVIN1.390e-3250.76ADP-ribosylation factor-like protein 1 OS=Bos taur... [more]
ARL1_RAT1.816e-3250.76ADP-ribosylation factor-like protein 1 OS=Rattus n... [more]
ARL1_MOUSE1.816e-3250.76ADP-ribosylation factor-like protein 1 OS=Mus musc... [more]
ARL1_DROME4.045e-3250.00ADP-ribosylation factor-like protein 1 OS=Drosophi... [more]
ARL1_CAEEL6.900e-3252.27ADP-ribosylation factor-like protein 1 OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189294 ID=CN189294; Name=CN189294; organism=Citrus sinensis; type=EST; length=625bp
TTTTTTTTTTTCCTTTTTATTTTTTTTTTTTGAGGAAAGATAAACATTCC
AGAATTATTCTGAAGCTACCAAAAACAAATCTCAACGTTTGCAAGGGAAA
CAACAAACACAGTAAAACGGGCAACGAAGCTATTACAGGAAGGAAAGCAA
GAACACTTGAGATGGGTTGTTAACTCTGTATTTCAGCAGTTGCGGCAACC
CAAAACTCAAAATTTAGTTGTCTATGCCTTGTTTGCAATGTTGTTTGAAA
GCCAATCAAGTCCCTCATACAGCCCTTCACCAAAAGTGGCACATGTGCTC
TGGATATACCAGTGGCGCTGGCGAAAAAAGTGAAAGCCAAGCTTGGCAGT
TATCTCAACAGCATTCATTGCATTTGGAAGATCTTGCTTGTTAACAAATA
CAAGCAGCACAGCATCTCTCAATTCATCCTCATTCAACATTCTGTGCAAC
TCATCCCTAGCTTCTACCACACGGTCGCGATCATTACTGTCAACCACAAA
GATGAGTCCTTGGGTGGTTTGGAAATAATGTCTCCACAAAGGTCGGATCT
TGTCTTGACCCCCGACATCCCAGACAGTAAAGCTGATGTTCTTATACTCA
ACGGTCTCTACATTAAATCCAATGG
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