CN189294

Overview
NameCN189294
Unique NameCN189294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL3_BOVIN (ADP-ribosylation factor-like protein 3 OS=Bos taurus GN=ARL3 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.468e-29
Identity = 60/131 (45.80%), Postives = 82/131 (62.60%), Query Frame = -3
Query:  228 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 620
            GFN+++V+ +     VWD+GGQ KIRP WR+YF+ T  LI+V+DS DR R  E   EL  +L E++L    +L+F NKQDL  A  A EI   L  H  R R W IQS  A  GEG+ +G++W+  N++ K
Sbjct:   50 GFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRFWQIQSCSALTGEGVQDGMNWVCKNVSAK 180          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL3_XENLA (ADP-ribosylation factor-like protein 3 OS=Xenopus laevis GN=arl3 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.591e-28
Identity = 59/131 (45.04%), Postives = 82/131 (62.60%), Query Frame = -3
Query:  228 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 620
            GFN+++V+ +     VWD+GGQ KIRP WR+YF+ T  LI+V+DS DR R  E   EL  +L+E++L    +L+F NKQDL  A  A EI   L  H  R R W IQS  A  G+G+ +G++W+  N+  K
Sbjct:   50 GFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGQGVQDGMNWVCKNVNAK 180          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL3_RAT (ADP-ribosylation factor-like protein 3 OS=Rattus norvegicus GN=Arl3 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.591e-28
Identity = 61/131 (46.56%), Postives = 80/131 (61.07%), Query Frame = -3
Query:  228 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 620
            GFN+++V+ +     VWD+GGQ KIRP WR YF+ T  LI+V+DS DR R  E   EL  +L E++L    +LVF NKQDL  A  A EI   L  H  R R W IQS  A  GEG+ +G++W+  N+  K
Sbjct:   50 GFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLVFANKQDLLTAAPAAEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL5A_MOUSE (ADP-ribosylation factor-like protein 5A OS=Mus musculus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.078e-28
Identity = 56/129 (43.41%), Postives = 82/129 (63.57%), Query Frame = -3
Query:  237 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNI 623
            IG NVE +   N  F +WD+GGQ+ +RP W  Y+  T+ +I VVDS DR+R+   R+EL++ML  ++LR A LL+F NKQD+   M   EI+  L     +   W+IQ+ CA  GEGL +GL+W+ + +
Sbjct:   48 IGSNVEEIVVNNTRFLMWDIGGQESLRPSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL3_PIG (ADP-ribosylation factor-like protein 3 OS=Sus scrofa GN=ARL3 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.078e-28
Identity = 60/131 (45.80%), Postives = 81/131 (61.83%), Query Frame = -3
Query:  228 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 620
            GFN+++V+ +     VWD+GGQ KIRP WR+YF+ T  LI+V+DS DR R  E   EL  +L E++L    +L+F NKQDL  A  A EI   L  H  R R W IQS  A  GEG+ +G++W+  N+  K
Sbjct:   50 GFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL3_DANRE (ADP-ribosylation factor-like protein 3 OS=Danio rerio GN=arl3 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.078e-28
Identity = 60/131 (45.80%), Postives = 82/131 (62.60%), Query Frame = -3
Query:  228 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 620
            GFN+++V+ +     VWD+GGQ KIRP WR+YF+ T  LI+V+DS DR R  E   EL  +L+E++L    +LVF NKQDL  A  A EI   L  H  R R W IQS  A  GEG+ +G++W+  ++  K
Sbjct:   50 GFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLVFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKSVNAK 180          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL2_CAEEL (ADP-ribosylation factor-like protein 2 OS=Caenorhabditis elegans GN=evl-20 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.714e-28
Identity = 53/132 (40.15%), Postives = 86/132 (65.15%), Query Frame = -3
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            +GF+++TV +K+    +WDVGGQ  +R  W++YF++T  LI+VVDS+DR+R+++  +EL ++L E+ L  A LLV  NK DLP A++   I   L  H  +  HW I S CA  G+ L + + WL +++ ++
Sbjct:   48 LGFDIKTVHFKDFQLNLWDVGGQKSLRSYWKNYFESTDALIWVVDSSDRERLLQCSEELKKLLGEERLAGASLLVLANKSDLPGAIDVNSIAQVLDLHSIKSHHWKIFSCCALSGDRLVQAMTWLCDDVGSR 179          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL3_MOUSE (ADP-ribosylation factor-like protein 3 OS=Mus musculus GN=Arl3 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.544e-28
Identity = 60/131 (45.80%), Postives = 80/131 (61.07%), Query Frame = -3
Query:  228 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 620
            GFN+++V+ +     VWD+GGQ KIRP WR YF+ T  LI+V+DS DR R  E   EL  +L E++L    +L+F NKQDL  A  A EI   L  H  R R W IQS  A  GEG+ +G++W+  N+  K
Sbjct:   50 GFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL3_HUMAN (ADP-ribosylation factor-like protein 3 OS=Homo sapiens GN=ARL3 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 4.629e-28
Identity = 59/131 (45.04%), Postives = 81/131 (61.83%), Query Frame = -3
Query:  228 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 620
            GFN+++V+ +     VWD+GGQ KIRP W++YF+ T  LI+V+DS DR R  E   EL  +L E++L    +L+F NKQDL  A  A EI   L  H  R R W IQS  A  GEG+ +G++W+  N+  K
Sbjct:   50 GFNIKSVQSQGFKLNVWDIGGQRKIRPYWKNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARL5_DICDI (ADP-ribosylation factor-like protein 5 OS=Dictyostelium discoideum GN=arl5 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.031e-27
Identity = 54/129 (41.86%), Postives = 84/129 (65.12%), Query Frame = -3
Query:  237 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNI 623
            +G N+E   Y+NI   +WD+GGQD +R  W  Y+  TQ +I V+DS DR RV   ++EL +ML  + L+ +++L++ NKQDL +AM+  E++  L  H  +   ++IQ+ CA  G+GL  GLDWL ++I
Sbjct:   52 VGSNLEEFVYRNIRLLMWDLGGQDLLRSTWNQYYINTQAVILVIDSTDRARVNLIKEELFKMLAHENLKKSIILIYANKQDLKDAMSPTELSTLLSLHSIKDHDYHIQACCALTGQGLESGLDWLVSHI 180          
The following BLAST results are available for this feature:
BLAST of CN189294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
ARL3_BOVIN5.468e-2945.80ADP-ribosylation factor-like protein 3 OS=Bos taur... [more]
ARL3_XENLA1.591e-2845.04ADP-ribosylation factor-like protein 3 OS=Xenopus ... [more]
ARL3_RAT1.591e-2846.56ADP-ribosylation factor-like protein 3 OS=Rattus n... [more]
ARL5A_MOUSE2.078e-2843.41ADP-ribosylation factor-like protein 5A OS=Mus mus... [more]
ARL3_PIG2.078e-2845.80ADP-ribosylation factor-like protein 3 OS=Sus scro... [more]
ARL3_DANRE2.078e-2845.80ADP-ribosylation factor-like protein 3 OS=Danio re... [more]
ARL2_CAEEL2.714e-2840.15ADP-ribosylation factor-like protein 2 OS=Caenorha... [more]
ARL3_MOUSE3.544e-2845.80ADP-ribosylation factor-like protein 3 OS=Mus musc... [more]
ARL3_HUMAN4.629e-2845.04ADP-ribosylation factor-like protein 3 OS=Homo sap... [more]
ARL5_DICDI1.031e-2741.86ADP-ribosylation factor-like protein 5 OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189294 ID=CN189294; Name=CN189294; organism=Citrus sinensis; type=EST; length=625bp
TTTTTTTTTTTCCTTTTTATTTTTTTTTTTTGAGGAAAGATAAACATTCC
AGAATTATTCTGAAGCTACCAAAAACAAATCTCAACGTTTGCAAGGGAAA
CAACAAACACAGTAAAACGGGCAACGAAGCTATTACAGGAAGGAAAGCAA
GAACACTTGAGATGGGTTGTTAACTCTGTATTTCAGCAGTTGCGGCAACC
CAAAACTCAAAATTTAGTTGTCTATGCCTTGTTTGCAATGTTGTTTGAAA
GCCAATCAAGTCCCTCATACAGCCCTTCACCAAAAGTGGCACATGTGCTC
TGGATATACCAGTGGCGCTGGCGAAAAAAGTGAAAGCCAAGCTTGGCAGT
TATCTCAACAGCATTCATTGCATTTGGAAGATCTTGCTTGTTAACAAATA
CAAGCAGCACAGCATCTCTCAATTCATCCTCATTCAACATTCTGTGCAAC
TCATCCCTAGCTTCTACCACACGGTCGCGATCATTACTGTCAACCACAAA
GATGAGTCCTTGGGTGGTTTGGAAATAATGTCTCCACAAAGGTCGGATCT
TGTCTTGACCCCCGACATCCCAGACAGTAAAGCTGATGTTCTTATACTCA
ACGGTCTCTACATTAAATCCAATGG
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