CN189292

Overview
NameCN189292
Unique NameCN189292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5170 contig Csv1_Contig5170:1047..1641. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_CANFA (Aminomethyltransferase, mitochondrial OS=Canis familiaris GN=AMT PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.009e-35
Identity = 74/138 (53.62%), Postives = 92/138 (66.67%), Query Frame = -2
Query:  181 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 594
            SLRLEAGLCLYG+D+++H TPVE  L+W +GKRRRA   F GA  I+ QL      RRVG    G P R+HS + + +G  IG +TSG  SPCLKKN+AMGYV S   + GT + +EVR K     ++KMPFV T YY
Sbjct:  263 SLRLEAGLCLYGSDIDEHTTPVEGSLSWTLGKRRRAAMDFPGASVIIAQLKGKVQRRRVGLTCEGAPVRAHSPILNMEGTVIGTVTSGCPSPCLKKNVAMGYVPSEYSRPGTPLLVEVRRKQQMAVVSKMPFVTTNYY 400          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_BOVIN (Aminomethyltransferase, mitochondrial OS=Bos taurus GN=AMT PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.366e-34
Identity = 73/138 (52.90%), Postives = 89/138 (64.49%), Query Frame = -2
Query:  181 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 594
            SLRLEAGLCLYGND+++H TPVE  L+W +GKRRRA   F GA  I+ QL      RRVG    G P R+ S +   +G  IG +TSG  SPCLKKN+AMGYV     + GT + +EVR K     ++KMPFV T YY
Sbjct:  257 SLRLEAGLCLYGNDIDEHTTPVEGSLSWTLGKRRRAAMDFPGASVIVPQLKSKAQRRRVGLMCDGAPVRAQSPILSPEGTVIGAVTSGCPSPCLKKNVAMGYVPYEYSRPGTPLLVEVRRKQQPAVVSKMPFVSTNYY 394          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_MOUSE (Aminomethyltransferase, mitochondrial OS=Mus musculus GN=Amt PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.975e-34
Identity = 73/138 (52.90%), Postives = 92/138 (66.67%), Query Frame = -2
Query:  181 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 594
            SLRLEAGLCLYGND+++H TPVE  L+W +GKRRR    F GA+ I+ QL      RRVG    G P R+HS + + +G  IG +TSG  SP LKKN+AMGYV     + GT++ +EVR K     ++KMPFVPT YY
Sbjct:  263 SLRLEAGLCLYGNDIDEHTTPVEGSLSWTLGKRRRIAMDFPGAKIIVPQLKGEVQRRRVGLICEGAPVRAHSPILNTEGTVIGTVTSGCPSPSLKKNVAMGYVPFKYSRPGTQLLVEVRRKQQMTVVSKMPFVPTNYY 400          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_DICDI (Aminomethyltransferase, mitochondrial OS=Dictyostelium discoideum GN=gcvT PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.156e-33
Identity = 74/141 (52.48%), Postives = 92/141 (65.25%), Query Frame = -2
Query:  178 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLD-EGPPVRRVGFFAGGPPARSHSKVHDEQGN-PIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 594
            SLRLEAGLCLYG+D+   +TP+EA L W I KRRR EGGF GA  I KQL  +G P +RVG    G PAR    + D   N  IG++TSG  SP  +++I+M YVK+   K GT+V + +RGK     I+KMPFVPT Y K
Sbjct:  262 SLRLEAGLCLYGHDLNDDITPIEASLNWLISKRRREEGGFPGASIIQKQLQKDGCPQKRVGVIINGAPAREGCLILDPSTNQEIGKVTSGTISPITRQSISMAYVKTPFSKIGTQVNVSIRGKPITATISKMPFVPTNYKK 402          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_YEAST (Aminomethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=GCV1 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 9.813e-25
Identity = 67/148 (45.27%), Postives = 88/148 (59.46%), Query Frame = -2
Query:  178 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRR----AEGGFLGAEKILKQLDEGPPVR-RVGF--FAGGPPARSHSKVH-DEQGNPIGEITSGGFSPCLKK-NIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 594
            SLRLEAG+CLYG+++++ +TPVEA L W I K RR     +  F G  KI+ QL+     + RVGF     GP AR+  K+   +    +G +TSG  SP L   NI   YV+ G HK GTK+ ++VR K Y   + KMP VPT YYK
Sbjct:  252 SLRLEAGMCLYGHELDESITPVEAALNWVISKSRRDLVDQKYWFNGYAKIMDQLNNKTYSKVRVGFKYLKKGPAARNGVKIFLPDAETEVGLVTSGSASPTLNNINIGQAYVQKGYHKKGTKLLVQVRNKFYPIELAKMPLVPTHYYK 399          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_PROMM (Aminomethyltransferase OS=Prochlorococcus marinus (strain MIT 9313) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.501e-20
Identity = 55/141 (39.01%), Postives = 80/141 (56.74%), Query Frame = -2
Query:  172 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 594
            +LRLEA + LYG DM+ + TP EAGL W +     A   F+G   + +Q ++GP  R VG    G     H        N +GEITSG +SP L++ IA+GY+ + L + G +V++E+RGK +   + K PF    Y +PS
Sbjct:  238 TLRLEAAMHLYGQDMDINTTPFEAGLGWLVHLEMPAP--FMGRTALEQQAEQGPIRRLVGLKLSGRAIARHGYPLLHNNNKVGEITSGTWSPSLEEAIALGYLPTALARIGNEVEVEIRGKHHRATVVKRPF----YRRPS 372          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_HALOH (Aminomethyltransferase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.501e-20
Identity = 51/133 (38.35%), Postives = 74/133 (55.64%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLE G CLYGND++++  P+EAGL W +   +  +  F+G   +LK  +EG   + VGF   G     H     + G+ IG +TSG  SP L + I MGYV+      G  + I VR +A  G + K+PF+
Sbjct:  228 TLRLEKGYCLYGNDIDENTHPLEAGLGWTV---KFDKASFIGKRALLKYKEEGLSRKLVGFKLKGRGIPRHGYPIKDNGDQIGVVTSGSMSPTLSEGIGMGYVRYDKATPGESITIVVRNRAITGEVVKLPFI 357          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_THEM4 (Aminomethyltransferase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=gcvT PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.572e-20
Identity = 54/131 (41.22%), Postives = 75/131 (57.25%), Query Frame = -2
Query:  199 LRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 591
            LRLEA L LYGNDM++ +TP+E G+ WA+    + E  F+G E + +QL+EG   R  GF         H     + G  IG +TSG FSP L + I M  ++ G +K+G  ++IE+R K     I KMPF
Sbjct:  227 LRLEASLLLYGNDMDETITPLEVGIKWAV----KFEKDFMGKEALKRQLEEGTSRRLKGFKIIDKGIARHGYKVFKDGKEIGYVTSGTFSPTLNQAIGMALIEKG-YKSGEIIEIEIRNKLVKAEIVKMPF 352          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_PROM3 (Aminomethyltransferase OS=Prochlorococcus marinus (strain MIT 9303) GN=gcvT PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.277e-20
Identity = 55/141 (39.01%), Postives = 78/141 (55.32%), Query Frame = -2
Query:  172 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 594
            +LRLEA + LYG DM+ + TP EAGL W +     A   F+G   + +Q ++GP  R VG    G     H        N +GEITSG +SP L + IA+GY+ + L + G +V +E+RGK +   + K PF    Y +PS
Sbjct:  238 TLRLEAAMHLYGQDMDINTTPFEAGLGWLVHLEMPAP--FMGRTALEQQAEQGPIRRLVGLKLSGRAIARHGYPLLHNNNKVGEITSGTWSPSLGEAIALGYLPTALARIGNEVAVEIRGKHHPATVVKRPF----YRRPS 372          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_PARD8 (Aminomethyltransferase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=gcvT PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.612e-19
Identity = 56/134 (41.79%), Postives = 73/134 (54.48%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEG-GFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHS-KVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLE G CLYGND++   +P+EAGL W     + AEG  F    ++ +Q  EG   +   F         H  ++ D +GN IG +TSG  SP LKK I MGYVK    KAGT + I+VR K     + K PF
Sbjct:  229 TLRLEMGFCLYGNDLDDTTSPIEAGLGWIT---KFAEGKNFTNRAELERQKKEGVTRKLCAFELQEKGIPRHGYEIADAEGNVIGVVTSGTMSPVLKKGIGMGYVKPEFAKAGTDIFIKVRNKNLKAQVVKAPF 359          
The following BLAST results are available for this feature:
BLAST of CN189292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
GCST_CANFA8.009e-3553.62Aminomethyltransferase, mitochondrial OS=Canis fam... [more]
GCST_BOVIN1.366e-3452.90Aminomethyltransferase, mitochondrial OS=Bos tauru... [more]
GCST_MOUSE3.975e-3452.90Aminomethyltransferase, mitochondrial OS=Mus muscu... [more]
GCST_DICDI1.156e-3352.48Aminomethyltransferase, mitochondrial OS=Dictyoste... [more]
GCST_YEAST9.813e-2545.27Aminomethyltransferase, mitochondrial OS=Saccharom... [more]
GCST_PROMM2.501e-2039.01Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_HALOH2.501e-2038.35Aminomethyltransferase OS=Halothermothrix orenii (... [more]
GCST_THEM45.572e-2041.22Aminomethyltransferase OS=Thermosipho melanesiensi... [more]
GCST_PROM37.277e-2039.01Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_PARD83.612e-1941.79Aminomethyltransferase OS=Parabacteroides distason... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189292 ID=CN189292; Name=CN189292; organism=Citrus sinensis; type=EST; length=595bp
GAGGGCTTTAAAGTAAACACTTTTATTCAGGCAACAAGAATCATAAGAAT
TTGCAGAATTAAAGAACTGCTAGCAATAAAGACAGTAATCTCGAGCAGTC
AATGTTTATGAAACAAGTCAAAACAGGAATCGAGTAGAGCTTCCATAAGC
AGAACCAACAAAGATGTACTAAGACGGCTTGTAGTATTTTGTTGGCACAA
ATGGCATTTTAGTGATGTTTCCATCGTAGGCTTTTCCTCGAACCTCAATC
TTAACTTTTGTGCCTGCCTTGTGCAATCCAGATTTTACATATCCCATGGC
TATATTCTTCTTGAGGCAGGGGCTGAATCCTCCACTGGTAATTTCTCCAA
TGGGATTCCCTTGCTCATCGTGAACCTTACTGTGTGATCTGGCAGGCGGA
CCTCCAGCGAAGAATCCAACACGTCTGACTGGCGGACCTTCGTCAAGTTG
TTTGAGTATTTTCTCAGCACCTAGAAAGCCACCTTCTGCTCTCCTCCTCT
TTCCTATGGCCCATGTCAGTCCAGCTTCTACAGGTGTCACGTGTTGTTCC
ATGTCATTACCATATAAACATAAGCCAGCTTCAAGTCGGAGACTG
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