CN189292

Overview
NameCN189292
Unique NameCN189292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_BACAC (Aminomethyltransferase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=gcvT PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.329e-13
Identity = 52/143 (36.36%), Postives = 77/143 (53.85%), Query Frame = -2
Query:  172 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 594
            +LR EA L LYG ++ + +TP+EAG+ +A+   + A+  F G   + +Q + G P + VG      G P R+H  V   +   IGE+TSG  SP LKK+I +  +        T+V+IE+R K       K   VPT +YK S
Sbjct:  232 TLRFEATLPLYGQELSKDITPIEAGIGFAVKTNKEAD--FFGKATLKEQKENGAPRKLVGIEVIERGIP-RTHYPVFIGE-EKIGEVTSGTQSPTLKKSIGLALIDVKYAAVDTEVEIEIRNKR-----VKAVVVPTPFYKRS 365          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_BACAA (Aminomethyltransferase OS=Bacillus anthracis (strain A0248) GN=gcvT PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.329e-13
Identity = 52/143 (36.36%), Postives = 77/143 (53.85%), Query Frame = -2
Query:  172 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 594
            +LR EA L LYG ++ + +TP+EAG+ +A+   + A+  F G   + +Q + G P + VG      G P R+H  V   +   IGE+TSG  SP LKK+I +  +        T+V+IE+R K       K   VPT +YK S
Sbjct:  232 TLRFEATLPLYGQELSKDITPIEAGIGFAVKTNKEAD--FFGKATLKEQKENGAPRKLVGIEVIERGIP-RTHYPVFIGE-EKIGEVTSGTQSPTLKKSIGLALIDVKYAAVDTEVEIEIRNKR-----VKAVVVPTPFYKRS 365          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_PELPB (Aminomethyltransferase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.736e-13
Identity = 49/137 (35.77%), Postives = 72/137 (52.55%), Query Frame = -2
Query:  190 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFA--GGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPT 594
            +LRLE G  LYG++++Q   P+EA L W +   +  +G F+G E    Q  EG   R V  F+  G    R H K+++     IG + SG  SP L++ +    V     K GT + +EVRG  + G I ++PFV T
Sbjct:  231 TLRLEMGYSLYGHEIDQDTNPLEARLKWVV---KMGKGHFMGKEAC--QQVEGNLKRGVAGFSLDGRVLPRQHFKLYNSDRQEIGWVCSGTLSPTLQEPVGTCNVVREYLKPGTPILVEVRGSLHTGVIRRLPFVTT 362          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_FLAPJ (Aminomethyltransferase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.736e-13
Identity = 44/133 (33.08%), Postives = 65/133 (48.87%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHS-KVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLE G CLYGND+    +P+EAGL W      + +  F  +  + KQ +EG   + V F         H  ++ D  GN IG +TSG  SP +   I +GYV +      + + I +R       + K+PF
Sbjct:  229 TLRLEMGFCLYGNDINDTTSPLEAGLGWI----TKFDKEFTNSANLKKQKEEGVARKLVAFEMQERAVPRHDYEIVDASGNVIGIVTSGTMSPSMNIGIGLGYVPTSFSTVDSDIFIRIRKNDVLAKVVKLPF 357          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_CHLT3 (Aminomethyltransferase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.736e-13
Identity = 49/137 (35.77%), Postives = 70/137 (51.09%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQ---LDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLE G  LYG++++    P EA L W     +  +G F+G    +++   L++      VGF   G    R   K+ D  G  IG + SG  SP L K I  GYVKS   K  +KV I +RGK  +  + K+PF+
Sbjct:  229 TLRLEMGYSLYGHEIDHQTNPYEAQLGWIT---KLQKGDFIGKNACVEKKLHLEQ----TLVGFTLTGKNIPRQGYKIQDLSGTDIGVVCSGTLSPTLGKPIGTGYVKSSFSKIDSKVYINIRGKLQEAAVVKVPFL 358          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_BACLD (Aminomethyltransferase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.736e-13
Identity = 43/132 (32.58%), Postives = 67/132 (50.76%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LR EA L LYG ++ + +TP+EAG+ +A+   + ++  F+G   +  Q + G   + VG          H      QG   GE+T+G  SP LKKN+ +  +K       T V++E+R K     I K PF
Sbjct:  230 TLRFEAKLPLYGQELSKDITPIEAGIGFAVKTNKASD--FIGKAVLASQKEHGADRKLVGLEMIDKGIPRHGYAVYYQGEQAGEVTTGTQSPTLKKNVGLALLKKEACALDTVVEVEIRNKRLKAKIVKTPF 359          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_BACCN (Aminomethyltransferase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.736e-13
Identity = 52/143 (36.36%), Postives = 78/143 (54.55%), Query Frame = -2
Query:  172 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 594
            +LR EA L LYG ++ + +TP+EAG+ +A+   + A+  F G E + +  + G P + VG      G P R+H  V+  +   IGE+TSG  SP LKK+I +  +        T+V+IE+R K       K   VPT +YK S
Sbjct:  232 TLRFEATLPLYGQELSKDITPIEAGIGFAVKTNKEAD--FFGKEVLKEYKENGAPRKLVGIEVIERGIP-RTHYPVYVGE-EKIGEVTSGTQSPTLKKSIGLALIDVKYAAIDTEVEIEIRKKR-----VKAVVVPTPFYKRS 365          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_ALKMQ (Aminomethyltransferase OS=Alkaliphilus metalliredigens (strain QYMF) GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.736e-13
Identity = 46/141 (32.62%), Postives = 75/141 (53.19%), Query Frame = -2
Query:  178 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAG--GPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 594
            +LR EA L LYG+++ + +TP+EAG  +A+  ++  +  FLG + +++Q + G   + VGF     G P   +   H  QG  IG +T+G FSP LK+NI +  + +   + G +V I +R K     +    F    Y K
Sbjct:  233 TLRFEAALPLYGHEINRDITPLEAGFGFAVKLKKEVD--FLGKKALIEQKEAGLTRKLVGFEMKDRGIPRSDYEVYH--QGEKIGFVTTGYFSPTLKRNIGLALIDAKYAELGNEVDILIRKKQVKAELISKTFYKKNYKK 369          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_CUPTR (Aminomethyltransferase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.267e-13
Identity = 49/135 (36.30%), Postives = 75/135 (55.56%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFA--GGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+ LYG DM+  V+P++AGL W +    ++E  F G   +      G   + +G      G   R+H KV    G+  GEITSG FSP L ++IA   +  G++  G  V++E+R +  +  + K+PFV
Sbjct:  241 TLRLEAGMNLYGQDMDIKVSPLDAGLAWTVD--LQSERDFTGKAALAA---AGSRQQFLGLILRDKGGVLRAHQKVITPAGD--GEITSGTFSPSLSQSIAFARLPQGVN-VGDTVQVEIRDRKLNATVVKLPFV 367          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_CLOBM (Aminomethyltransferase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.267e-13
Identity = 45/123 (36.59%), Postives = 69/123 (56.10%), Query Frame = -2
Query:  232 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGK 594
            +LR EA L LYGN+M++ +TP+E G+ + +  + + E  F+G + ++KQ  EG   + VGF     G P   +  + D  G  IG +T+G  SP L K I +  V+    K GT+  I+VR K
Sbjct:  233 TLRFEASLLLYGNEMDETITPLEVGMGFFV--KLKVEEDFIGKDALIKQKAEGVTRKLVGFELIDKGIPRHGYEVIKD--GKVIGHVTTGYKSPTLNKAIGLALVEEQYSKIGTEFNIKVRKK 351          
The following BLAST results are available for this feature:
BLAST of CN189292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
GCST_BACAC1.329e-1336.36Aminomethyltransferase OS=Bacillus anthracis (stra... [more]
GCST_BACAA1.329e-1336.36Aminomethyltransferase OS=Bacillus anthracis (stra... [more]
GCST_PELPB1.736e-1335.77Aminomethyltransferase OS=Pelodictyon phaeoclathra... [more]
GCST_FLAPJ1.736e-1333.08Aminomethyltransferase OS=Flavobacterium psychroph... [more]
GCST_CHLT31.736e-1335.77Aminomethyltransferase OS=Chloroherpeton thalassiu... [more]
GCST_BACLD1.736e-1332.58Aminomethyltransferase OS=Bacillus licheniformis (... [more]
GCST_BACCN1.736e-1336.36Aminomethyltransferase OS=Bacillus cereus subsp. c... [more]
GCST_ALKMQ1.736e-1332.62Aminomethyltransferase OS=Alkaliphilus metalliredi... [more]
GCST_CUPTR2.267e-1336.30Aminomethyltransferase OS=Cupriavidus taiwanensis ... [more]
GCST_CLOBM2.267e-1336.59Aminomethyltransferase OS=Clostridium botulinum (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189292 ID=CN189292; Name=CN189292; organism=Citrus sinensis; type=EST; length=595bp
GAGGGCTTTAAAGTAAACACTTTTATTCAGGCAACAAGAATCATAAGAAT
TTGCAGAATTAAAGAACTGCTAGCAATAAAGACAGTAATCTCGAGCAGTC
AATGTTTATGAAACAAGTCAAAACAGGAATCGAGTAGAGCTTCCATAAGC
AGAACCAACAAAGATGTACTAAGACGGCTTGTAGTATTTTGTTGGCACAA
ATGGCATTTTAGTGATGTTTCCATCGTAGGCTTTTCCTCGAACCTCAATC
TTAACTTTTGTGCCTGCCTTGTGCAATCCAGATTTTACATATCCCATGGC
TATATTCTTCTTGAGGCAGGGGCTGAATCCTCCACTGGTAATTTCTCCAA
TGGGATTCCCTTGCTCATCGTGAACCTTACTGTGTGATCTGGCAGGCGGA
CCTCCAGCGAAGAATCCAACACGTCTGACTGGCGGACCTTCGTCAAGTTG
TTTGAGTATTTTCTCAGCACCTAGAAAGCCACCTTCTGCTCTCCTCCTCT
TTCCTATGGCCCATGTCAGTCCAGCTTCTACAGGTGTCACGTGTTGTTCC
ATGTCATTACCATATAAACATAAGCCAGCTTCAAGTCGGAGACTG
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