CN189292

Overview
NameCN189292
Unique NameCN189292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_STAAS (Aminomethyltransferase OS=Staphylococcus aureus (strain MSSA476) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.597e-13
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = -2 
Query:  208 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITK 594
            +LRLEAGL L+G D+ + +TP E G+ +A   +   +  F+G   +  Q + G P R VG        AR+  +V D  GN IGE+TSG  SP   K+IA+  +K    + G ++ ++VR +     I K
Sbjct:  230 TLRLEAGLPLHGQDLTESITPYEGGIAFA--SKPLIDADFIGKSVLKDQKENGAPRRTVGLELLEKGIARTGYEVMDLDGNIIGEVTSGTQSPSSGKSIALAMIKRDEFEMGRELLVQVRKRQLKAKIVK 357
[Close]
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_STAAR (Aminomethyltransferase OS=Staphylococcus aureus (strain MRSA252) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.597e-13
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = -2 
Query:  208 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITK 594
            +LRLEAGL L+G D+ + +TP E G+ +A   +   +  F+G   +  Q + G P R VG        AR+  +V D  GN IGE+TSG  SP   K+IA+  +K    + G ++ ++VR +     I K
Sbjct:  230 TLRLEAGLPLHGQDLTESITPYEGGIAFA--SKPLIDADFIGKSVLKDQKENGAPRRTVGLELLEKGIARTGYEVMDLDGNIIGEVTSGTQSPSSGKSIALAMIKRDEFEMGRELLVQVRKRQLKAKIVK 357
[Close]
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_STAAN (Aminomethyltransferase OS=Staphylococcus aureus (strain N315) GN=gcvT PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.597e-13
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = -2 
Query:  208 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITK 594
            +LRLEAGL L+G D+ + +TP E G+ +A   +   +  F+G   +  Q + G P R VG        AR+  +V D  GN IGE+TSG  SP   K+IA+  +K    + G ++ ++VR +     I K
Sbjct:  230 TLRLEAGLPLHGQDLTESITPYEGGIAFA--SKPLIDADFIGKSVLKDQKENGAPRRTVGLELLEKGIARTGYEVMDLDGNIIGEVTSGTQSPSSGKSIALAMIKRDEFEMGRELLVQVRKRQLKAKIVK 357
[Close]
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_STAAM (Aminomethyltransferase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gcvT PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.597e-13
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = -2 
Query:  208 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITK 594
            +LRLEAGL L+G D+ + +TP E G+ +A   +   +  F+G   +  Q + G P R VG        AR+  +V D  GN IGE+TSG  SP   K+IA+  +K    + G ++ ++VR +     I K
Sbjct:  230 TLRLEAGLPLHGQDLTESITPYEGGIAFA--SKPLIDADFIGKSVLKDQKENGAPRRTVGLELLEKGIARTGYEVMDLDGNIIGEVTSGTQSPSSGKSIALAMIKRDEFEMGRELLVQVRKRQLKAKIVK 357
[Close]
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_STAAE (Aminomethyltransferase OS=Staphylococcus aureus (strain Newman) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.597e-13
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = -2 
Query:  208 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITK 594
            +LRLEAGL L+G D+ + +TP E G+ +A   +   +  F+G   +  Q + G P R VG        AR+  +V D  GN IGE+TSG  SP   K+IA+  +K    + G ++ ++VR +     I K
Sbjct:  230 TLRLEAGLPLHGQDLTESITPYEGGIAFA--SKPLIDADFIGKSVLKDQKENGAPRRTVGLELLEKGIARTGYEVMDLDGNIIGEVTSGTQSPSSGKSIALAMIKRDEFEMGRELLVQVRKRQLKAKIVK 357
[Close]
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_STAAC (Aminomethyltransferase OS=Staphylococcus aureus (strain COL) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.597e-13
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = -2 
Query:  208 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITK 594
            +LRLEAGL L+G D+ + +TP E G+ +A   +   +  F+G   +  Q + G P R VG        AR+  +V D  GN IGE+TSG  SP   K+IA+  +K    + G ++ ++VR +     I K
Sbjct:  230 TLRLEAGLPLHGQDLTESITPYEGGIAFA--SKPLIDADFIGKSVLKDQKENGAPRRTVGLELLEKGIARTGYEVMDLDGNIIGEVTSGTQSPSSGKSIALAMIKRDEFEMGRELLVQVRKRQLKAKIVK 357
[Close]
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_STAAB (Aminomethyltransferase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.597e-13
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = -2 
Query:  208 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITK 594
            +LRLEAGL L+G D+ + +TP E G+ +A   +   +  F+G   +  Q + G P R VG        AR+  +V D  GN IGE+TSG  SP   K+IA+  +K    + G ++ ++VR +     I K
Sbjct:  230 TLRLEAGLPLHGQDLTESITPYEGGIAFA--SKPLIDADFIGKSVLKDQKENGAPRRTVGLELLEKGIARTGYEVMDLDGNIIGEVTSGTQSPSSGKSIALAMIKRDEFEMGRELLVQVRKRQLKAKIVK 357
[Close]
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_STAA9 (Aminomethyltransferase OS=Staphylococcus aureus (strain JH9) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.597e-13
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = -2 
Query:  208 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITK 594
            +LRLEAGL L+G D+ + +TP E G+ +A   +   +  F+G   +  Q + G P R VG        AR+  +V D  GN IGE+TSG  SP   K+IA+  +K    + G ++ ++VR +     I K
Sbjct:  230 TLRLEAGLPLHGQDLTESITPYEGGIAFA--SKPLIDADFIGKSVLKDQKENGAPRRTVGLELLEKGIARTGYEVMDLDGNIIGEVTSGTQSPSSGKSIALAMIKRDEFEMGRELLVQVRKRQLKAKIVK 357
[Close]
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_STAA8 (Aminomethyltransferase OS=Staphylococcus aureus (strain NCTC 8325) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.597e-13
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = -2 
Query:  208 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITK 594
            +LRLEAGL L+G D+ + +TP E G+ +A   +   +  F+G   +  Q + G P R VG        AR+  +V D  GN IGE+TSG  SP   K+IA+  +K    + G ++ ++VR +     I K
Sbjct:  230 TLRLEAGLPLHGQDLTESITPYEGGIAFA--SKPLIDADFIGKSVLKDQKENGAPRRTVGLELLEKGIARTGYEVMDLDGNIIGEVTSGTQSPSSGKSIALAMIKRDEFEMGRELLVQVRKRQLKAKIVK 357
[Close]
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_STAA3 (Aminomethyltransferase OS=Staphylococcus aureus (strain USA300) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.597e-13
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = -2 
Query:  208 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITK 594
            +LRLEAGL L+G D+ + +TP E G+ +A   +   +  F+G   +  Q + G P R VG        AR+  +V D  GN IGE+TSG  SP   K+IA+  +K    + G ++ ++VR +     I K
Sbjct:  230 TLRLEAGLPLHGQDLTESITPYEGGIAFA--SKPLIDADFIGKSVLKDQKENGAPRRTVGLELLEKGIARTGYEVMDLDGNIIGEVTSGTQSPSSGKSIALAMIKRDEFEMGRELLVQVRKRQLKAKIVK 357
The following BLAST results are available for this feature:
BLAST of CN189292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
GCST_STAAS6.597e-1335.38Aminomethyltransferase OS=Staphylococcus aureus (s... [more]
GCST_STAAR6.597e-1335.38Aminomethyltransferase OS=Staphylococcus aureus (s... [more]
GCST_STAAN6.597e-1335.38Aminomethyltransferase OS=Staphylococcus aureus (s... [more]
GCST_STAAM6.597e-1335.38Aminomethyltransferase OS=Staphylococcus aureus (s... [more]
GCST_STAAE6.597e-1335.38Aminomethyltransferase OS=Staphylococcus aureus (s... [more]
GCST_STAAC6.597e-1335.38Aminomethyltransferase OS=Staphylococcus aureus (s... [more]
GCST_STAAB6.597e-1335.38Aminomethyltransferase OS=Staphylococcus aureus (s... [more]
GCST_STAA96.597e-1335.38Aminomethyltransferase OS=Staphylococcus aureus (s... [more]
GCST_STAA86.597e-1335.38Aminomethyltransferase OS=Staphylococcus aureus (s... [more]
GCST_STAA36.597e-1335.38Aminomethyltransferase OS=Staphylococcus aureus (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189292 ID=CN189292; Name=CN189292; organism=Citrus sinensis; type=EST; length=595bp
GAGGGCTTTAAAGTAAACACTTTTATTCAGGCAACAAGAATCATAAGAAT
TTGCAGAATTAAAGAACTGCTAGCAATAAAGACAGTAATCTCGAGCAGTC
AATGTTTATGAAACAAGTCAAAACAGGAATCGAGTAGAGCTTCCATAAGC
AGAACCAACAAAGATGTACTAAGACGGCTTGTAGTATTTTGTTGGCACAA
ATGGCATTTTAGTGATGTTTCCATCGTAGGCTTTTCCTCGAACCTCAATC
TTAACTTTTGTGCCTGCCTTGTGCAATCCAGATTTTACATATCCCATGGC
TATATTCTTCTTGAGGCAGGGGCTGAATCCTCCACTGGTAATTTCTCCAA
TGGGATTCCCTTGCTCATCGTGAACCTTACTGTGTGATCTGGCAGGCGGA
CCTCCAGCGAAGAATCCAACACGTCTGACTGGCGGACCTTCGTCAAGTTG
TTTGAGTATTTTCTCAGCACCTAGAAAGCCACCTTCTGCTCTCCTCCTCT
TTCCTATGGCCCATGTCAGTCCAGCTTCTACAGGTGTCACGTGTTGTTCC
ATGTCATTACCATATAAACATAAGCCAGCTTCAAGTCGGAGACTG
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