CN189292

Overview
NameCN189292
Unique NameCN189292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_BURM9 (Aminomethyltransferase OS=Burkholderia mallei (strain NCTC 10229) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.597e-13
Identity = 49/137 (35.77%), Postives = 75/137 (54.74%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKI----LKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+ LYG DM++ V+P++AGL W +     A   F+G + +     +    G  +++    AGG   R+H KV    G   GEITSG FSP ++++IA   V   +   G  V +++R K     + K+PFV
Sbjct:  234 TLRLEAGMNLYGQDMDESVSPLDAGLAWTVD--LSAPRAFVGRDALEAHGSRAAFVGLILQKENGRAGG-VLRAHQKVATPHGE--GEITSGTFSPSMQESIAFARVPKDV-AIGDTVHVQIRDKQLPARVVKLPFV 364          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_BURM7 (Aminomethyltransferase OS=Burkholderia mallei (strain NCTC 10247) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.597e-13
Identity = 49/137 (35.77%), Postives = 75/137 (54.74%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKI----LKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+ LYG DM++ V+P++AGL W +     A   F+G + +     +    G  +++    AGG   R+H KV    G   GEITSG FSP ++++IA   V   +   G  V +++R K     + K+PFV
Sbjct:  234 TLRLEAGMNLYGQDMDESVSPLDAGLAWTVD--LSAPRAFVGRDALEAHGSRAAFVGLILQKENGRAGG-VLRAHQKVATPHGE--GEITSGTFSPSMQESIAFARVPKDV-AIGDTVHVQIRDKQLPARVVKLPFV 364          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_XANAC (Aminomethyltransferase OS=Xanthomonas axonopodis pv. citri GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.616e-13
Identity = 49/133 (36.84%), Postives = 67/133 (50.38%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+ LYG DM+  VTP EAGL W I      +  F+G   +  Q  +G P + +G          H +      N  GEI SG FSP L K IA   V +G   +  ++++++RGK       K PFV
Sbjct:  231 TLRLEAGMNLYGQDMDDGVTPYEAGLAWTIALDEGRD--FIGRSVLESQKAQGAPRQLIGVVMDEKGVLRHGQT-VLTANGEGEILSGTFSPTLGKAIAFARVPAG---SIEQLRVDIRGKQVPLRAVKFPFV 357          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_STAES (Aminomethyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.616e-13
Identity = 46/130 (35.38%), Postives = 68/130 (52.31%), Query Frame = -2
Query:  208 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITK 594
            +LRLEAGL L+G D+ + +TP E G+ +A   +   E  F+G   +  Q + G   R VG    G   AR+   V DE  N IG +TSG  SP   K+IA+  +     + G KV +++R +  +  I K
Sbjct:  230 TLRLEAGLPLHGQDLSESITPYEGGIAFA--AKPLIENHFIGKSVLKAQKENGSERRTVGLELLGKGIARTGYDVLDENSNEIGFVTSGTQSPSSGKSIALAIIDRDAFEMGKKVIVQIRKRQVEAKIVK 357          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_STAEQ (Aminomethyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.616e-13
Identity = 46/130 (35.38%), Postives = 68/130 (52.31%), Query Frame = -2
Query:  208 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITK 594
            +LRLEAGL L+G D+ + +TP E G+ +A   +   E  F+G   +  Q + G   R VG    G   AR+   V DE  N IG +TSG  SP   K+IA+  +     + G KV +++R +  +  I K
Sbjct:  230 TLRLEAGLPLHGQDLSESITPYEGGIAFA--AKPLIENHFIGKSVLKAQKENGSERRTVGLELLGKGIARTGYDVLDENSNEIGFVTSGTQSPSSGKSIALAIIDRDAFEMGKKVIVQIRKRQVEAKIVK 357          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_PYRKO (Probable aminomethyltransferase OS=Pyrococcus kodakaraensis GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.616e-13
Identity = 52/149 (34.90%), Postives = 73/149 (48.99%), Query Frame = -2
Query:  181 SLRLEAGLCLYGNDMEQ---------HVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 594
            +LRLEAG  LYGN+ ++          VTP++A L +AI   +     F+G E +LKQ + G P + V F     G P   +    D  G  IGE+TSG  SP L   I + +VK      G ++++E+RGK         PF   K Y
Sbjct:  250 TLRLEAGYTLYGNETKEKQLLSTDIDEVTPLQANLDFAIFWDKE----FIGKEALLKQKERGLPSKMVHFKMVDKGVPREGYKVYKD--GELIGEVTSGTLSPLLGIGIGIAFVKPEYAVPGVEIEVEIRGKPKKAVTVAPPFYDPKKY 392          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_CLOB1 (Aminomethyltransferase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.616e-13
Identity = 45/123 (36.59%), Postives = 67/123 (54.47%), Query Frame = -2
Query:  232 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGK 594
            +LR EA L LYGN+M++ +TP+E G+      + + E  F+G + ++KQ  EG   + VGF     G P   +  + D  G  IG +T+G  SP L K I +  V+    K GT+  I+VR K
Sbjct:  233 TLRFEASLLLYGNEMDETITPLEVGM--GFFAKLKIEEDFIGKDALIKQKAEGVTRKLVGFELLDKGIPRHGYEVIKD--GKVIGHVTTGYKSPTLNKAIGLALVEEQYSKIGTEFNIKVRKK 351          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_PELLD (Aminomethyltransferase OS=Pelodictyon luteolum (strain DSM 273) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.125e-12
Identity = 46/136 (33.82%), Postives = 69/136 (50.74%), Query Frame = -2
Query:  190 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPA-RSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPT 594
            +LRLE G  LYG++++Q   P+EA L W +   +  +G F+G E  L Q++  P     GF   G    R   K+ +     IG + SG  SP L++ +    +     K GT+V +E+RG    G I  +PFV T
Sbjct:  231 TLRLEMGYSLYGHEIDQDTNPLEARLKWVV---KLDKGHFIGREACL-QVELNPKRSVAGFVLEGRALPRQGCKLFNSDHQEIGRVCSGTLSPTLQEPVGTCSLLREYQKPGTRVFVEIRGTMQPGTIRPLPFVKT 362          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_CORJK (Aminomethyltransferase OS=Corynebacterium jeikeium (strain K411) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.125e-12
Identity = 47/139 (33.81%), Postives = 74/139 (53.24%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFA-GGPPARSHSKVHDEQG-NPIGEITSGGFSPCLKKNIAMGY-----VKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLEAG+ LYGN++   +TPV+AGL   I    +++  F+G + I+   ++G     +G    G   AR   +V    G   IG +TSG  SP L   +A+ Y     V SG    G  V++++RGK ++  +  +PF
Sbjct:  248 TLRLEAGMPLYGNELSLKLTPVDAGL--GILAATKSKDSFVGRDAIVSAKEKGTQQVLIGLAGEGRRAARGGYEVFAGDGEKAIGAVTSGALSPTLGHPVALAYVAKSAVSSGAAAEGATVEVDIRGKRFEYKVVALPF 384          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_BURCJ (Aminomethyltransferase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.125e-12
Identity = 49/137 (35.77%), Postives = 76/137 (55.47%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKI----LKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+ LYG DM+  V+P++AGL W +     A   F+G   +     +    G  +++    AGG   R+H KV    G   GEITSG FSP ++++IA   V + + + G  V++++R K     + K+PFV
Sbjct:  234 TLRLEAGMNLYGQDMDDTVSPLDAGLAWTVD--LAAPRDFVGRAALEANGTRAAFVGLILQKENGKAGG-VLRAHQKVVTPHGE--GEITSGTFSPSMQESIAFARVPAAV-QIGDTVQVQIRDKNLPARVVKLPFV 364          
The following BLAST results are available for this feature:
BLAST of CN189292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
GCST_BURM96.597e-1335.77Aminomethyltransferase OS=Burkholderia mallei (str... [more]
GCST_BURM76.597e-1335.77Aminomethyltransferase OS=Burkholderia mallei (str... [more]
GCST_XANAC8.616e-1336.84Aminomethyltransferase OS=Xanthomonas axonopodis p... [more]
GCST_STAES8.616e-1335.38Aminomethyltransferase OS=Staphylococcus epidermid... [more]
GCST_STAEQ8.616e-1335.38Aminomethyltransferase OS=Staphylococcus epidermid... [more]
GCST_PYRKO8.616e-1334.90Probable aminomethyltransferase OS=Pyrococcus koda... [more]
GCST_CLOB18.616e-1336.59Aminomethyltransferase OS=Clostridium botulinum (s... [more]
GCST_PELLD1.125e-1233.82Aminomethyltransferase OS=Pelodictyon luteolum (st... [more]
GCST_CORJK1.125e-1233.81Aminomethyltransferase OS=Corynebacterium jeikeium... [more]
GCST_BURCJ1.125e-1235.77Aminomethyltransferase OS=Burkholderia cepacia (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001K02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189292 ID=CN189292; Name=CN189292; organism=Citrus sinensis; type=EST; length=595bp
GAGGGCTTTAAAGTAAACACTTTTATTCAGGCAACAAGAATCATAAGAAT
TTGCAGAATTAAAGAACTGCTAGCAATAAAGACAGTAATCTCGAGCAGTC
AATGTTTATGAAACAAGTCAAAACAGGAATCGAGTAGAGCTTCCATAAGC
AGAACCAACAAAGATGTACTAAGACGGCTTGTAGTATTTTGTTGGCACAA
ATGGCATTTTAGTGATGTTTCCATCGTAGGCTTTTCCTCGAACCTCAATC
TTAACTTTTGTGCCTGCCTTGTGCAATCCAGATTTTACATATCCCATGGC
TATATTCTTCTTGAGGCAGGGGCTGAATCCTCCACTGGTAATTTCTCCAA
TGGGATTCCCTTGCTCATCGTGAACCTTACTGTGTGATCTGGCAGGCGGA
CCTCCAGCGAAGAATCCAACACGTCTGACTGGCGGACCTTCGTCAAGTTG
TTTGAGTATTTTCTCAGCACCTAGAAAGCCACCTTCTGCTCTCCTCCTCT
TTCCTATGGCCCATGTCAGTCCAGCTTCTACAGGTGTCACGTGTTGTTCC
ATGTCATTACCATATAAACATAAGCCAGCTTCAAGTCGGAGACTG
back to top