CN189292

Overview
NameCN189292
Unique NameCN189292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_STRM5 (Aminomethyltransferase OS=Stenotrophomonas maltophilia (strain R551-3) GN=gcvT PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 45/133 (33.83%), Postives = 67/133 (50.38%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+ LYG DM++ ++P EA L W +      +  F+G + +  Q   G   + +G          H +     G   GEI SG FSP L K IA   V +G  + G +V +++RG+     + K PFV
Sbjct:  231 TLRLEAGMNLYGQDMDEAISPYEAALAWTVSLDEGRD--FIGRDVLEAQKAAGNARQMIGLVMDEKGVLRHGQAVTTAGGQ-GEILSGTFSPTLAKGIAFARVPAG--ELG-QVTVDIRGRQVPVRVVKFPFV 357          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_PYRFU (Probable aminomethyltransferase OS=Pyrococcus furiosus GN=gcvT PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 51/148 (34.46%), Postives = 73/148 (49.32%), Query Frame = -2
Query:  181 SLRLEAGLCLYGNDMEQ---------HVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 594
            +LRLEAG  LYGND ++          VTP++A L +AI      +  F+G + +LKQ ++G   + V F        R   KV+   G  IGE+TSG  SP L   I + +VK    K G +++I++RG          PF   K Y
Sbjct:  250 TLRLEAGYTLYGNDTKELQLLSTDIDEVTPLQANLEFAI----YWDKDFIGKDALLKQKEKGLGRKLVHFKMLEKSVPREGYKVY-ANGELIGEVTSGTLSPLLNIGIGIAFVKEEYAKPGVEIEIDIRGTRKKAITVTPPFYDPKKY 392          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_NATPD (Probable aminomethyltransferase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=gcvT PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 45/135 (33.33%), Postives = 66/135 (48.89%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHV---TPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLEAG  L GN+ +      TP EA + +A+         F+G++ +  Q + GP  R VG          H       G+ +GE+TSG  SP L   IA+GYV     + GT++ + VRG   D  +  +PF
Sbjct:  226 TLRLEAGFLLGGNEFDPETNPRTPYEANIGFAVDLGTE----FVGSDALAAQREAGPDERLVGLRLQDRGIARHGHDIVAAGDVVGEVTSGTMSPTLGAAIALGYVPVEYTEPGTELAVVVRGDEKDAVVEALPF 356          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_LISIN (Aminomethyltransferase OS=Listeria innocua GN=gcvT PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 41/134 (30.60%), Postives = 73/134 (54.48%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVG--FFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLEA L LYG ++ + +TP+EAGL +A+  ++ A+  F+G + ++KQ + G   + VG      G P   +    +++   IG ITSG  SP L  NI +  + +   +   ++++ +R K     + + PF
Sbjct:  228 TLRLEAVLALYGQELSKDITPLEAGLNFAVKLKKEAD--FIGKQALIKQKEAGLTRKLVGIELIERGIPRHDYPVFLNDK--EIGVITSGTQSPTLGTNIGLALIDTAYTELDQELEVGIRNKKVKAKVVQTPF 357          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_BORPD (Aminomethyltransferase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=gcvT PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 50/134 (37.31%), Postives = 72/134 (53.73%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+ LYG DM++   P +AGLTW +   +  E  F+G +  L+Q     P   VG         R+H  V+   G   GEITSG  SP L  ++A   V  G+ + G  V++++RGK     + K+PFV
Sbjct:  231 TLRLEAGMNLYGQDMDELTQPDQAGLTWTV-SLKDPERRFVGRD-ALEQF--AAPRGFVGLKLQERGVMRAHMAVYTPLGE--GEITSGTMSPTLGVSVAFARVPQGV-QPGQTVEVDIRGKRVPALVCKLPFV 357          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_BORPA (Aminomethyltransferase OS=Bordetella parapertussis GN=gcvT PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 48/137 (35.04%), Postives = 74/137 (54.01%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKI----LKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+ LYG DM++ V P +AGL+W +  +  A   F+G + I    + +   G  ++  G        R+H  V   QG  +GE+TSG  SP L  ++    V  G+ + G  V++E+RGK     + K+PFV
Sbjct:  231 TLRLEAGMNLYGQDMDELVHPDQAGLSWTVALKDEAR-RFVGRDAIEQFAVPRAFVGLKLQERGVM------RAHMPVRCAQG--MGELTSGTMSPTLGVSVGFARVPVGV-QPGDAVEVEIRGKWVPALVCKLPFV 357          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_BORBR (Aminomethyltransferase OS=Bordetella bronchiseptica GN=gcvT PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 48/137 (35.04%), Postives = 74/137 (54.01%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKI----LKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+ LYG DM++ V P +AGL+W +  +  A   F+G + I    + +   G  ++  G        R+H  V   QG  +GE+TSG  SP L  ++    V  G+ + G  V++E+RGK     + K+PFV
Sbjct:  231 TLRLEAGMNLYGQDMDELVHPDQAGLSWTVALKDEAR-RFVGRDAIEQFAVPRAFVGLKLQERGVM------RAHMPVRCAQG--MGELTSGTMSPTLGVSVGFARVPVGV-QPGDAVEVEIRGKWVPALVCKLPFV 357          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_BACHD (Aminomethyltransferase OS=Bacillus halodurans GN=gcvT PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 43/134 (32.09%), Postives = 72/134 (53.73%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LR EA L LYG ++ + ++P+EAG+ +A+   +     F+G E + KQ ++G P + VG      G P   +    D Q   IG +T+G  SP LKKN+ +  +++   + GT+V + VR +     +   PF
Sbjct:  232 TLRFEAKLPLYGQELTKDISPIEAGIGFAVKVDKE---DFIGKEILKKQKEQGAPRKLVGLEMVDKGIPRTGYEVYVDNQ--KIGFVTTGTQSPTLKKNVGLALLQAEHSELGTEVIVHVRKRQLIAKVVATPF 360          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_XYLFM (Aminomethyltransferase OS=Xylella fastidiosa (strain M12) GN=gcvT PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 49/143 (34.27%), Postives = 70/143 (48.95%), Query Frame = -2
Query:  172 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEG-GFLGAEKILKQLDEGPPVRRVGFFAGGPPARSH-SKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 594
            +LRLEAG+ LYG DM++ V+P EA L W +      EG  F+G   + +Q   G   + +G          H  KV   QG   G I SG FSP L K I    V +G     ++V++ +R +A    + K PFV     +P+
Sbjct:  231 TLRLEAGMNLYGQDMDEQVSPYEAALGWTV---MLDEGRNFIGRNVLEQQKTNGVSRQMIGLLMDEKGVLRHGQKVLTAQGE--GHILSGTFSPTLNKAIGFARVPAG---KPSEVRVNIRDRAIPVRVVKFPFVREGQTQPN 365          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_PROAC (Aminomethyltransferase OS=Propionibacterium acnes GN=gcvT PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 45/132 (34.09%), Postives = 68/132 (51.52%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLEAG+ LYG+++   + P +AGL   +  ++  EG F+G    L+  D       VG    G  A         +   +G ITSG  SP L   IAM +V   + K GT + ++VRGKA +  + ++PF
Sbjct:  239 TLRLEAGMPLYGHELGTDIHPSQAGLGRVVNFKK--EGDFVG-RCALENRDTTADRVLVGLTGEGRRAGRAGYAVVNEDKTVGAITSGILSPTLGHPIAMAFVDPDVAKIGTSLSVDVRGKALNTTVVELPF 367          
The following BLAST results are available for this feature:
BLAST of CN189292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
GCST_STRM51.244e-1133.83Aminomethyltransferase OS=Stenotrophomonas maltoph... [more]
GCST_PYRFU2.122e-1134.46Probable aminomethyltransferase OS=Pyrococcus furi... [more]
GCST_NATPD2.122e-1133.33Probable aminomethyltransferase OS=Natronomonas ph... [more]
GCST_LISIN2.122e-1130.60Aminomethyltransferase OS=Listeria innocua GN=gcvT... [more]
GCST_BORPD2.122e-1137.31Aminomethyltransferase OS=Bordetella petrii (strai... [more]
GCST_BORPA2.122e-1135.04Aminomethyltransferase OS=Bordetella parapertussis... [more]
GCST_BORBR2.122e-1135.04Aminomethyltransferase OS=Bordetella bronchiseptic... [more]
GCST_BACHD2.122e-1132.09Aminomethyltransferase OS=Bacillus halodurans GN=g... [more]
GCST_XYLFM2.772e-1134.27Aminomethyltransferase OS=Xylella fastidiosa (stra... [more]
GCST_PROAC2.772e-1134.09Aminomethyltransferase OS=Propionibacterium acnes ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189292 ID=CN189292; Name=CN189292; organism=Citrus sinensis; type=EST; length=595bp
GAGGGCTTTAAAGTAAACACTTTTATTCAGGCAACAAGAATCATAAGAAT
TTGCAGAATTAAAGAACTGCTAGCAATAAAGACAGTAATCTCGAGCAGTC
AATGTTTATGAAACAAGTCAAAACAGGAATCGAGTAGAGCTTCCATAAGC
AGAACCAACAAAGATGTACTAAGACGGCTTGTAGTATTTTGTTGGCACAA
ATGGCATTTTAGTGATGTTTCCATCGTAGGCTTTTCCTCGAACCTCAATC
TTAACTTTTGTGCCTGCCTTGTGCAATCCAGATTTTACATATCCCATGGC
TATATTCTTCTTGAGGCAGGGGCTGAATCCTCCACTGGTAATTTCTCCAA
TGGGATTCCCTTGCTCATCGTGAACCTTACTGTGTGATCTGGCAGGCGGA
CCTCCAGCGAAGAATCCAACACGTCTGACTGGCGGACCTTCGTCAAGTTG
TTTGAGTATTTTCTCAGCACCTAGAAAGCCACCTTCTGCTCTCCTCCTCT
TTCCTATGGCCCATGTCAGTCCAGCTTCTACAGGTGTCACGTGTTGTTCC
ATGTCATTACCATATAAACATAAGCCAGCTTCAAGTCGGAGACTG
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