CN189292

Overview
NameCN189292
Unique NameCN189292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5170 contig Csv1_Contig5170:1047..1641. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_PORGI (Aminomethyltransferase OS=Porphyromonas gingivalis GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.372e-18
Identity = 55/135 (40.74%), Postives = 77/135 (57.04%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFA---GGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLE G CLYGND+    +P+EAGL W    +   +   + + KI+++   G   R++  F     G P R H ++ + +G  IGE+TSG  SPCLKK I MGYV +   K GT++ I VRG+     I K PF
Sbjct:  229 TLRLEMGFCLYGNDICDTTSPIEAGLGWIT--KFTDDKMDMPSRKIMEEQKAGGLKRKLVAFELKDKGIP-RQHYEIANAEGQIIGEVTSGTMSPCLKKGIGMGYVATEFSKVGTELGIMVRGRQLKAEIVKPPF 360          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_PORG3 (Aminomethyltransferase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.372e-18
Identity = 55/135 (40.74%), Postives = 77/135 (57.04%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFA---GGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLE G CLYGND+    +P+EAGL W    +   +   + + KI+++   G   R++  F     G P R H ++ + +G  IGE+TSG  SPCLKK I MGYV +   K GT++ I VRG+     I K PF
Sbjct:  229 TLRLEMGFCLYGNDICDTTSPIEAGLGWIT--KFTDDKMDMPSRKIMEEQKAGGLKRKLVAFELKDKGIP-RQHYEIANAEGQIIGEVTSGTMSPCLKKGIGMGYVATEFSKVGTELGIMVRGRQLKAEIVKPPF 360          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_LEPIN (Aminomethyltransferase OS=Leptospira interrogans GN=gcvT PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.341e-18
Identity = 54/137 (39.42%), Postives = 79/137 (57.66%), Query Frame = -2
Query:  193 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFF---AGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVP 594
            +LR+EA   LYG+++    TP+E+G+ W + ++   E  +  +EKIL Q   G P + V F    AG P  R + +V D QGN IG+ TSG FSP LKK I +  ++S   K G  ++IE+R +     IT  PF+P
Sbjct:  234 TLRIEAKYPLYGHELNDQWTPIESGIGWIVKEK---ENPYFSSEKILFQKKNGVPSKIVSFALTEAGVP--RENFRVLDSQGNEIGKTTSGTFSPSLKKGIGLALIQSEKIKDGEPIQIEIREQPKQAIITMKPFIP 365          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_LEPIC (Aminomethyltransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gcvT PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.341e-18
Identity = 54/137 (39.42%), Postives = 79/137 (57.66%), Query Frame = -2
Query:  193 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFF---AGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVP 594
            +LR+EA   LYG+++    TP+E+G+ W + ++   E  +  +EKIL Q   G P + V F    AG P  R + +V D QGN IG+ TSG FSP LKK I +  ++S   K G  ++IE+R +     IT  PF+P
Sbjct:  234 TLRIEAKYPLYGHELNDQWTPIESGIGWIVKEK---ENPYFSSEKILFQKKNGVPSKIVSFALTEAGVP--RENFRVLDSQGNEIGKTTSGTFSPSLKKGIGLALIQSEKIKDGEPIQIEIREQPKQAIITMKPFIP 365          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_CYAP8 (Aminomethyltransferase OS=Cyanothece sp. (strain PCC 8801) GN=gcvT PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.057e-18
Identity = 49/132 (37.12%), Postives = 73/132 (55.30%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLEA +CLY  D++ + TP+EAGL W +     ++G F+G + + KQ  +G   R VG    G     H      +G  +GE+TSG   P + K IA+ YV   L K GT +++E+RG+     + K PF
Sbjct:  233 TLRLEAAMCLYSQDIDDNTTPLEAGLNWLV--HLDSKGDFIGRDILEKQKAQGVERRLVGLQMEGRHIARHGYPVLYEGKIVGEVTSGTLPPTVGKAIALAYVPRSLGKVGTPLEVEIRGQNCQAIVVKKPF 362          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_SYNS9 (Aminomethyltransferase OS=Synechococcus sp. (strain CC9902) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.811e-18
Identity = 48/132 (36.36%), Postives = 70/132 (53.03%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLEA + LYG DM     P EAGL W +     A+  F+G + + +  + GP  R VG    G     H       G P+G +TSG +SP L++ IA+  + + L K GT + +E+RGKA    + + PF
Sbjct:  232 TLRLEAAMHLYGQDMNADTNPFEAGLGWLVHLEMPAD--FIGRQALERAAETGPNKRLVGLKLEGRAIARHDYPVLHNGEPVGVVTSGTWSPTLEEPIALASIPTALAKLGTNLSVEIRGKAQPATVVRRPF 361          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_BACTN (Aminomethyltransferase OS=Bacteroides thetaiotaomicron GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.811e-18
Identity = 55/135 (40.74%), Postives = 74/135 (54.81%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGG-FLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLE G CLYGND++   +P+EAGL W     +  EG  F+    + KQ  EG   + VGF     G P   +  V++E G  IG +TSG  SP  K  I MGYVK    K GT++ I++RG+     + K PF
Sbjct:  229 TLRLEMGFCLYGNDLDDKTSPIEAGLGWIT---KFVEGKEFINRPMLEKQKSEGTTRKLVGFEMIDRGIPRHGYELVNEE-GEGIGVVTSGTMSPTRKIGIGMGYVKPEYAKVGTEICIDMRGRKLKAIVVKPPF 359          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_BACA2 (Aminomethyltransferase OS=Bacillus amyloliquefaciens (strain FZB42) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.811e-18
Identity = 46/132 (34.85%), Postives = 75/132 (56.82%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LR EA L LYG ++ + +TP+EAG+ +A+  + + +  F G   + +Q ++G P + VG          H     + G PIGE+T+G  SP LKKNI +  +K+   + GT+V++E+R K     I + PF
Sbjct:  230 TLRFEAKLALYGQELTKDITPIEAGIGFAV--KHKKDSDFFGKSVLREQKEKGAPRKLVGLEMIEKGIPRHGYAVKKDGVPIGEVTTGTQSPTLKKNIGLALIKTEFSEVGTEVEVEIRKKTVKAKIVRTPF 359          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_SYNR3 (Aminomethyltransferase OS=Synechococcus sp. (strain RCC307) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.896e-18
Identity = 49/132 (37.12%), Postives = 72/132 (54.55%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            SLRLEA + LYGNDM+ + +P+E GL W +      E  F+G E + +Q  EG   + VG    G     H       G P+G +TSG FSP L+  +A+  V++ L K G ++ +E+RG+     + K PF
Sbjct:  225 SLRLEAAMHLYGNDMDANTSPLECGLGWLVHLEMPIE--FVGREALERQTAEGVSRKLVGLQLQGRAIARHDYPVLHNGEPVGVVTSGTFSPTLEHPVALASVRADLAKLGNELMVEIRGRQEPAVVVKRPF 354          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_SYNY3 (Aminomethyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=gcvT PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.162e-17
Identity = 52/132 (39.39%), Postives = 71/132 (53.79%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLEAG+ LYG DM    TP+EAGL W +     ++G F+G   + +Q   G   R VG          H       G  +G +TSG  SP L+K IA+GYV + L K G ++++EVRGK Y   + K  F
Sbjct:  235 TLRLEAGMGLYGQDMNDETTPLEAGLGWLV--HLDSKGDFIGRAVLTEQKANGVEKRLVGLEMLAKQIARHDYPILHNGEIMGIVTSGTLSPTLQKAIALGYVPTELAKVGQELEVEVRGKTYGIKVVKKLF 364          
The following BLAST results are available for this feature:
BLAST of CN189292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
GCST_PORGI1.372e-1840.74Aminomethyltransferase OS=Porphyromonas gingivalis... [more]
GCST_PORG31.372e-1840.74Aminomethyltransferase OS=Porphyromonas gingivalis... [more]
GCST_LEPIN2.341e-1839.42Aminomethyltransferase OS=Leptospira interrogans G... [more]
GCST_LEPIC2.341e-1839.42Aminomethyltransferase OS=Leptospira interrogans s... [more]
GCST_CYAP83.057e-1837.12Aminomethyltransferase OS=Cyanothece sp. (strain P... [more]
GCST_SYNS96.811e-1836.36Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_BACTN6.811e-1840.74Aminomethyltransferase OS=Bacteroides thetaiotaomi... [more]
GCST_BACA26.811e-1834.85Aminomethyltransferase OS=Bacillus amyloliquefacie... [more]
GCST_SYNR38.896e-1837.12Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_SYNY31.162e-1739.39Aminomethyltransferase OS=Synechocystis sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189292 ID=CN189292; Name=CN189292; organism=Citrus sinensis; type=EST; length=595bp
GAGGGCTTTAAAGTAAACACTTTTATTCAGGCAACAAGAATCATAAGAAT
TTGCAGAATTAAAGAACTGCTAGCAATAAAGACAGTAATCTCGAGCAGTC
AATGTTTATGAAACAAGTCAAAACAGGAATCGAGTAGAGCTTCCATAAGC
AGAACCAACAAAGATGTACTAAGACGGCTTGTAGTATTTTGTTGGCACAA
ATGGCATTTTAGTGATGTTTCCATCGTAGGCTTTTCCTCGAACCTCAATC
TTAACTTTTGTGCCTGCCTTGTGCAATCCAGATTTTACATATCCCATGGC
TATATTCTTCTTGAGGCAGGGGCTGAATCCTCCACTGGTAATTTCTCCAA
TGGGATTCCCTTGCTCATCGTGAACCTTACTGTGTGATCTGGCAGGCGGA
CCTCCAGCGAAGAATCCAACACGTCTGACTGGCGGACCTTCGTCAAGTTG
TTTGAGTATTTTCTCAGCACCTAGAAAGCCACCTTCTGCTCTCCTCCTCT
TTCCTATGGCCCATGTCAGTCCAGCTTCTACAGGTGTCACGTGTTGTTCC
ATGTCATTACCATATAAACATAAGCCAGCTTCAAGTCGGAGACTG
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