CN189292

Overview
NameCN189292
Unique NameCN189292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_ERWT9 (Aminomethyltransferase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=gcvT PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 47/137 (34.31%), Postives = 75/137 (54.74%), Query Frame = -2 
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHS---KVHDEQGNPI-GEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+ LYG +M++ V+P+ A ++W IG    ++  F+G E +  Q  +G   R VG          ++   +  D  GN + G ITSG FSP L  +IA+  V +G+   G +  +++R +A    +TK  FV
Sbjct:  226 TLRLEAGMNLYGQEMDEKVSPLAANMSWTIG-WEPSDRQFIGREMLEIQRTKGTE-RLVGLIMTEKGVLRNALPVRFSDADGNMLEGVITSGSFSPTLGCSIALARVPAGI---GEQAVVQIRNRAMPVTVTKPVFV 357
The following BLAST results are available for this feature:
BLAST of CN189292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
GCST_ERWT98.065e-1134.31Aminomethyltransferase OS=Erwinia tasmaniensis (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189292 ID=CN189292; Name=CN189292; organism=Citrus sinensis; type=EST; length=595bp
GAGGGCTTTAAAGTAAACACTTTTATTCAGGCAACAAGAATCATAAGAAT
TTGCAGAATTAAAGAACTGCTAGCAATAAAGACAGTAATCTCGAGCAGTC
AATGTTTATGAAACAAGTCAAAACAGGAATCGAGTAGAGCTTCCATAAGC
AGAACCAACAAAGATGTACTAAGACGGCTTGTAGTATTTTGTTGGCACAA
ATGGCATTTTAGTGATGTTTCCATCGTAGGCTTTTCCTCGAACCTCAATC
TTAACTTTTGTGCCTGCCTTGTGCAATCCAGATTTTACATATCCCATGGC
TATATTCTTCTTGAGGCAGGGGCTGAATCCTCCACTGGTAATTTCTCCAA
TGGGATTCCCTTGCTCATCGTGAACCTTACTGTGTGATCTGGCAGGCGGA
CCTCCAGCGAAGAATCCAACACGTCTGACTGGCGGACCTTCGTCAAGTTG
TTTGAGTATTTTCTCAGCACCTAGAAAGCCACCTTCTGCTCTCCTCCTCT
TTCCTATGGCCCATGTCAGTCCAGCTTCTACAGGTGTCACGTGTTGTTCC
ATGTCATTACCATATAAACATAAGCCAGCTTCAAGTCGGAGACTG
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