CN189292

Overview
NameCN189292
Unique NameCN189292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_SYNPX (Aminomethyltransferase OS=Synechococcus sp. (strain WH8102) GN=gcvT PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.162e-17
Identity = 49/132 (37.12%), Postives = 70/132 (53.03%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLEA + LYG DM    TP EAGL W +      +  F+G + + +  + GP  R VG    G     H       G  +G +TSG +SP L++ IA+ YV + L K G ++ +E+RGKA    + K PF
Sbjct:  234 TLRLEAAMHLYGMDMNAETTPFEAGLGWLVHLEMPVD--FVGRQALEQAAESGPTKRLVGLKLQGRAIARHDYPVLHNGETVGVVTSGTWSPTLEEPIALAYVPTALAKLGAELSVEIRGKAQPACVVKRPF 363          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_ANASP (Aminomethyltransferase OS=Anabaena sp. (strain PCC 7120) GN=gcvT PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.162e-17
Identity = 49/132 (37.12%), Postives = 70/132 (53.03%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLEA + LYG D++ + TP+EAGL W +      +G F+G   + +Q   G   R +G    G     H       G  +G +TSG  SP L   +A+ YV S L K G  +++E+RGKAY   + K PF
Sbjct:  240 TLRLEAAMALYGQDIDDNTTPLEAGLGWLV--HLDTKGDFIGRSVLEQQKATGVQRRLIGLQTQGRNIARHGYQVLSDGKVVGGVTSGTLSPTLGYPVALAYVPSKLAKVGQPLEVEIRGKAYPAVVVKRPF 369          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_NEIMA (Aminomethyltransferase OS=Neisseria meningitidis serogroup A GN=gcvT PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.982e-17
Identity = 52/134 (38.81%), Postives = 79/134 (58.96%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAG-GPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LR+EAG+ LYGNDM+   +P+EAG+ W +  +  +   F+G   +L   ++G  V++VG   G G   R+H +V  ++G   GE TSG FSP LK++IA+  V       G   K+ +RGK  D  + K+PFV
Sbjct:  230 TLRMEAGMNLYGNDMDDDTSPLEAGMGWTVDLKDESR-DFVGKAALLALKEKGVAVKQVGLLLGKGGILRAHMEVLTDKGK--GETTSGVFSPSLKQSIAIARVPKDFD--GDTAKVLIRGKEADVRVLKLPFV 358          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_GEOKA (Aminomethyltransferase OS=Geobacillus kaustophilus GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.380e-17
Identity = 49/132 (37.12%), Postives = 74/132 (56.06%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LR EA L LYG ++   ++PVEAGL +A+  +   E  F+G   + +Q +EGPP R VG          H  +    G  +G +T+G  SP LKKNI +  VK+ +   G +V++++RGK    NI  +PF
Sbjct:  230 TLRFEACLPLYGQELSDSISPVEAGLGFAV--KTEKETPFIGQAVLKRQKEEGPPRRLVGIEMIDRGIPRHGYLVFADGEEVGFVTTGTQSPTLKKNIGLALVKADVAAIGREVEVDIRGKRLKANIVPIPF 359          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_SYNP2 (Aminomethyltransferase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=gcvT PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.531e-17
Identity = 51/132 (38.64%), Postives = 67/132 (50.76%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLEAGL LYG DM+   TP+EAGL W I  + +    F+  + +  Q   G   R VG    G     H       G  +G +TSG  SP L+K IA+ Y+     K G  V +E+RGK Y   + K PF
Sbjct:  228 TLRLEAGLHLYGQDMDDDTTPLEAGLGWLIHWQEK--DAFIAKDILQTQKAAGVQRRLVGLEMQGRGIARHDYSVLVNGEAVGLVTSGTMSPTLEKAIALAYLPLEFSKVGQAVTVEIRGKQYPAQVVKKPF 357          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_SYNPW (Aminomethyltransferase OS=Synechococcus sp. (strain WH7803) GN=gcvT PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.285e-16
Identity = 48/132 (36.36%), Postives = 66/132 (50.00%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLEA + LYG DM+   TP EAGL W +         F G   + +  D GP  R VG    G     H       G   G ITSG +SP L++ IA+ YV + L K G ++ +E+RG+     + + PF
Sbjct:  236 TLRLEAAMHLYGQDMDADTTPFEAGLGWLV--HLEMPSTFTGRAALERAADSGPSRRLVGLKLKGRAIARHGYPVIHNGEQAGAITSGSWSPTLQEAIALAYVPTALAKVGQELGVEIRGQVQAATVVRRPF 365          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_THISH (Aminomethyltransferase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=gcvT PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.678e-16
Identity = 56/134 (41.79%), Postives = 75/134 (55.97%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+ LYG DM++ V+P+E+GL W +     AE  F+G   + KQ   G   R VG    G    R H +V        GEITSGGFSP L  +IA+  V +G    G +V+++VRGK     + K PFV
Sbjct:  226 TLRLEAGMNLYGQDMDEQVSPLESGLAWTVA-FEPAERDFVGRAALEKQKAAGGLRRFVGLVLEGRGVLRGHMRVLCGAAGE-GEITSGGFSPTLGVSIALARVPAG---TGERVEVDVRGKPQPARLVKPPFV 354          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_SYNS3 (Aminomethyltransferase OS=Synechococcus sp. (strain CC9311) GN=gcvT PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.678e-16
Identity = 47/132 (35.61%), Postives = 70/132 (53.03%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLEA + LYG DM+   TP EAGL W +     A   F+G + + +  ++GP  R VG    G     H       G  +G +TSG +SP L++ IA+  +   L K GT++ +E+RG+     + K PF
Sbjct:  236 TLRLEAAMHLYGQDMDAATTPFEAGLGWLVHLEMPAL--FIGRQALEQAAEQGPSKRLVGLKLQGRSIARHDYPVIHNGATVGVVTSGSWSPTLQEPIALASLPPALAKLGTELSVEIRGQLQPATVVKRPF 365          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_NEIMB (Aminomethyltransferase OS=Neisseria meningitidis serogroup B GN=gcvT PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.191e-16
Identity = 51/134 (38.06%), Postives = 78/134 (58.21%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVG-FFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LR+EAG+ LYGNDM+   +P+EAG+ W +  +  +   F+G   +L   ++G  V++VG     G   R+H +V  ++G   GE TSG FSP LK++IA+  V       G   K+ +RGK  D  + K+PFV
Sbjct:  230 TLRMEAGMNLYGNDMDDDTSPLEAGMGWTVDLKDESR-DFVGKAALLALKEKGVAVKQVGLLLEKGGILRAHMEVLTDKGQ--GETTSGVFSPSLKQSIAIARVPKDFD--GDTAKVLMRGKEVDVRVLKLPFV 358          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_LEPBL (Aminomethyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=gcvT PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.862e-16
Identity = 50/137 (36.50%), Postives = 77/137 (56.20%), Query Frame = -2
Query:  193 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFF---AGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVP 594
            +LR+EA   LYG+++    TP+E+G+ W + +++     +  + KIL Q   G   + V F    AG P  R + +V D QGN IG+ TSG FSP LKK I +  +++   K G  ++IE+R +     IT  PF+P
Sbjct:  234 TLRIEAKYPLYGHELNNQWTPIESGIGWIVKEKKNP---YFSSGKILSQKKNGTEFKIVAFALTEAGVP--RENFRVLDFQGNEIGKTTSGTFSPSLKKGIGLASIRTEKIKDGEPIQIEIREQPKQAIITTKPFIP 365          
The following BLAST results are available for this feature:
BLAST of CN189292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
GCST_SYNPX1.162e-1737.12Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_ANASP1.162e-1737.12Aminomethyltransferase OS=Anabaena sp. (strain PCC... [more]
GCST_NEIMA1.982e-1738.81Aminomethyltransferase OS=Neisseria meningitidis s... [more]
GCST_GEOKA3.380e-1737.12Aminomethyltransferase OS=Geobacillus kaustophilus... [more]
GCST_SYNP27.531e-1738.64Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_SYNPW1.285e-1636.36Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_THISH1.678e-1641.79Aminomethyltransferase OS=Thioalkalivibrio sp. (st... [more]
GCST_SYNS31.678e-1635.61Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_NEIMB2.191e-1638.06Aminomethyltransferase OS=Neisseria meningitidis s... [more]
GCST_LEPBL2.862e-1636.50Aminomethyltransferase OS=Leptospira borgpeterseni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189292 ID=CN189292; Name=CN189292; organism=Citrus sinensis; type=EST; length=595bp
GAGGGCTTTAAAGTAAACACTTTTATTCAGGCAACAAGAATCATAAGAAT
TTGCAGAATTAAAGAACTGCTAGCAATAAAGACAGTAATCTCGAGCAGTC
AATGTTTATGAAACAAGTCAAAACAGGAATCGAGTAGAGCTTCCATAAGC
AGAACCAACAAAGATGTACTAAGACGGCTTGTAGTATTTTGTTGGCACAA
ATGGCATTTTAGTGATGTTTCCATCGTAGGCTTTTCCTCGAACCTCAATC
TTAACTTTTGTGCCTGCCTTGTGCAATCCAGATTTTACATATCCCATGGC
TATATTCTTCTTGAGGCAGGGGCTGAATCCTCCACTGGTAATTTCTCCAA
TGGGATTCCCTTGCTCATCGTGAACCTTACTGTGTGATCTGGCAGGCGGA
CCTCCAGCGAAGAATCCAACACGTCTGACTGGCGGACCTTCGTCAAGTTG
TTTGAGTATTTTCTCAGCACCTAGAAAGCCACCTTCTGCTCTCCTCCTCT
TTCCTATGGCCCATGTCAGTCCAGCTTCTACAGGTGTCACGTGTTGTTCC
ATGTCATTACCATATAAACATAAGCCAGCTTCAAGTCGGAGACTG
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