CN189292

Overview
NameCN189292
Unique NameCN189292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_LEPBJ (Aminomethyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=gcvT PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.862e-16
Identity = 50/137 (36.50%), Postives = 77/137 (56.20%), Query Frame = -2
Query:  193 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFF---AGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVP 594
            +LR+EA   LYG+++    TP+E+G+ W + +++     +  + KIL Q   G   + V F    AG P  R + +V D QGN IG+ TSG FSP LKK I +  +++   K G  ++IE+R +     IT  PF+P
Sbjct:  234 TLRIEAKYPLYGHELNNQWTPIESGIGWIVKEKKNP---YFSSGKILSQKKNGTEFKIVAFALTEAGVP--RENFRVLDFQGNEIGKTTSGTFSPSLKKGIGLASIRTEKIKDGEPIQIEIREQPKQAIITTKPFIP 365          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_ALCBS (Aminomethyltransferase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=gcvT PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.862e-16
Identity = 54/133 (40.60%), Postives = 73/133 (54.89%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAGL LYGNDM++ +TP EA + W +    R    F+G + +L Q + G   +      G    R+H KV    G   GEITSG FSP L K+IA+  + +G   A  KV +E+R K     + K PFV
Sbjct:  224 TLRLEAGLNLYGNDMDESITPWEANMGWTVMLNDRE---FIGRQPLLNQKENGHSEQVGLILEGKGVLRAHQKVLMPNGEE-GEITSGTFSPTLGKSIALARLPAG---ATGKVDVEIRNKRQVAQVVKPPFV 349          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_BACFR (Aminomethyltransferase OS=Bacteroides fragilis GN=gcvT PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.738e-16
Identity = 52/135 (38.52%), Postives = 73/135 (54.07%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEG-GFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLE G CLYGND++   +P+EAGL W     +  +G  F     + KQ  EG   + VGF     G P   + ++   +G+ IG +TSG  SP  K  I MGYVK    K GT++ I++RG+     + K PF
Sbjct:  229 TLRLEMGFCLYGNDLDDTTSPIEAGLGWIT---KFVDGKNFTNRSMLEKQKAEGTVRKLVGFEMIDRGIPRHGY-ELTTAEGDKIGVVTSGTMSPIRKIGIGMGYVKPEYSKIGTEICIDMRGRKLKAVVVKPPF 359          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_BACFN (Aminomethyltransferase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=gcvT PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.738e-16
Identity = 52/135 (38.52%), Postives = 73/135 (54.07%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEG-GFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLE G CLYGND++   +P+EAGL W     +  +G  F     + KQ  EG   + VGF     G P   + ++   +G+ IG +TSG  SP  K  I MGYVK    K GT++ I++RG+     + K PF
Sbjct:  229 TLRLEMGFCLYGNDLDDTTSPIEAGLGWIT---KFVDGKNFTNRSMLEKQKAEGTVRKLVGFEMIDRGIPRHGY-ELTTAEGDKIGVVTSGTMSPIRKIGIGMGYVKPEYSKIGTEICIDMRGRKLKAVVVKPPF 359          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_THEP3 (Aminomethyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gcvT PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.881e-16
Identity = 51/141 (36.17%), Postives = 76/141 (53.90%), Query Frame = -2
Query:  178 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 594
            +LR EAGL LYGN++ + +TP+EAG  + +   +  +G F+G + +LKQ +EG   + VGF     G P   +    D Q   IG +T+G FSP LKKNI +  + S   + G +++I +R K     I    F    Y K
Sbjct:  233 TLRFEAGLPLYGNELSEEITPLEAGFEFFV---KFDKGNFIGKDALLKQKEEGLKRKIVGFEMIDNGIPRHGYEVRADNQ--KIGYVTTGYFSPTLKKNIGLALIDSKYAQLGNQIEIVIRNKPLKALIISKNFYKKNYKK 368          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_THETN (Aminomethyltransferase OS=Thermoanaerobacter tengcongensis GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.375e-16
Identity = 48/139 (34.53%), Postives = 74/139 (53.24%), Query Frame = -2
Query:  178 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 594
            +LR EAGL LYGN++ + +TP+EAGL + +   +  +G F+G + +LKQ ++G   + VGF   G     H          IG +T+G FSP LKKNI +  + S   + G ++++ +R K     I    F    Y K
Sbjct:  239 TLRFEAGLPLYGNELGEDITPLEAGLGFFV---KFDKGNFIGKDALLKQKEQGLKRKLVGFEMIGNGIPRHGYEVQADNQKIGYVTTGYFSPTLKKNIGLALIDSKYAQIGNQIEVIIRNKPLKAVIVDKNFYKKNYKK 374          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_PROMA (Aminomethyltransferase OS=Prochlorococcus marinus GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.375e-16
Identity = 49/132 (37.12%), Postives = 69/132 (52.27%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLEAG+ LYGND+    TP EAGL W +      E  F+G   ++KQ +EG   + V     G            +   +GEITSG +SP L + IA+ Y+   L K GT V +++R K +   + K PF
Sbjct:  239 TLRLEAGMPLYGNDINNTTTPFEAGLGWLVHLETPDE--FIGKAALVKQTNEGINKKLVALKIEGRAIARKGYQIMFKNKFVGEITSGSWSPTLNEGIALAYLPIDLTKIGTAVSVQIRDKLHTAIVAKKPF 368          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_THEPX (Aminomethyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.326e-16
Identity = 50/142 (35.21%), Postives = 79/142 (55.63%), Query Frame = -2
Query:  178 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHS-KVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 594
            +LR EAGL LYGN++ + +TP+EAG  + +   +  +G F+G + +LKQ +EG   + VGF     G P   +  + H+++   IG +T+G FSP LKKNI +  + S   + G +++I +R K     I    F    Y K
Sbjct:  233 TLRFEAGLPLYGNELSEEITPLEAGFEFFV---KFDKGNFIGKDALLKQKEEGLKRKIVGFEMIDNGIPRHGYEVRAHNQK---IGYVTTGYFSPTLKKNIGLALIDSKYAQLGNQIEIVIRNKPLKALIISKNFYKKNYKK 368          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_PROM1 (Aminomethyltransferase OS=Prochlorococcus marinus (strain NATL1A) GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.326e-16
Identity = 48/134 (35.82%), Postives = 75/134 (55.97%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLEA + LYGND+    TP EAGL W +         F+G + + KQ + G   + VG      G   + +  +++ +   +G +TSG +SP L+K IA+ YV S + K  T++++E+RGK +   I K PF
Sbjct:  238 TLRLEASMHLYGNDINLDTTPFEAGLGWLV--HLEMPNDFIGRKALEKQAEVGTQKKLVGIQVLDKGIARKGYPVLYNSE--TVGIVTSGTWSPTLQKPIALAYVPSEIAKVNTQIEVEIRGKKHPAIIVKRPF 367          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_CARHZ (Aminomethyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.326e-16
Identity = 49/134 (36.57%), Postives = 75/134 (55.97%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LR EA L LYG+++   +TP+EAGL WA+   +     F+G E +L Q + G   + VG      G P + +  V +++G  +G +TSG F+P LKKN+AM  V     + GT+V + +RGK     +   PF
Sbjct:  227 TLRFEACLPLYGHELSAEITPLEAGLGWAVKFNKE---DFIGKEALLAQKNAGLKRKIVGLEMIGAGIPRQGYEIVFNQRG--VGFVTSGTFAPFLKKNLAMAMVDLEAAEIGTEVDVIIRGKGVRARVISRPF 355          
The following BLAST results are available for this feature:
BLAST of CN189292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
GCST_LEPBJ2.862e-1636.50Aminomethyltransferase OS=Leptospira borgpeterseni... [more]
GCST_ALCBS2.862e-1640.60Aminomethyltransferase OS=Alcanivorax borkumensis ... [more]
GCST_BACFR3.738e-1638.52Aminomethyltransferase OS=Bacteroides fragilis GN=... [more]
GCST_BACFN3.738e-1638.52Aminomethyltransferase OS=Bacteroides fragilis (st... [more]
GCST_THEP34.881e-1636.17Aminomethyltransferase OS=Thermoanaerobacter pseud... [more]
GCST_THETN6.375e-1634.53Aminomethyltransferase OS=Thermoanaerobacter tengc... [more]
GCST_PROMA6.375e-1637.12Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_THEPX8.326e-1635.21Aminomethyltransferase OS=Thermoanaerobacter sp. (... [more]
GCST_PROM18.326e-1635.82Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_CARHZ8.326e-1636.57Aminomethyltransferase OS=Carboxydothermus hydroge... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189292 ID=CN189292; Name=CN189292; organism=Citrus sinensis; type=EST; length=595bp
GAGGGCTTTAAAGTAAACACTTTTATTCAGGCAACAAGAATCATAAGAAT
TTGCAGAATTAAAGAACTGCTAGCAATAAAGACAGTAATCTCGAGCAGTC
AATGTTTATGAAACAAGTCAAAACAGGAATCGAGTAGAGCTTCCATAAGC
AGAACCAACAAAGATGTACTAAGACGGCTTGTAGTATTTTGTTGGCACAA
ATGGCATTTTAGTGATGTTTCCATCGTAGGCTTTTCCTCGAACCTCAATC
TTAACTTTTGTGCCTGCCTTGTGCAATCCAGATTTTACATATCCCATGGC
TATATTCTTCTTGAGGCAGGGGCTGAATCCTCCACTGGTAATTTCTCCAA
TGGGATTCCCTTGCTCATCGTGAACCTTACTGTGTGATCTGGCAGGCGGA
CCTCCAGCGAAGAATCCAACACGTCTGACTGGCGGACCTTCGTCAAGTTG
TTTGAGTATTTTCTCAGCACCTAGAAAGCCACCTTCTGCTCTCCTCCTCT
TTCCTATGGCCCATGTCAGTCCAGCTTCTACAGGTGTCACGTGTTGTTCC
ATGTCATTACCATATAAACATAAGCCAGCTTCAAGTCGGAGACTG
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