CN189292

Overview
NameCN189292
Unique NameCN189292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_BACV8 (Aminomethyltransferase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 52/135 (38.52%), Postives = 71/135 (52.59%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEG-GFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLE G CLYGND+    +P+EAGL W     +  EG  F     + KQ  EG   + + F     G P   +  V+ + G  IGE+TSG  SP  K  I MGYV++     GT++ I+VRG+     + K PF
Sbjct:  229 TLRLEMGFCLYGNDLSDTTSPLEAGLGWIT---KFVEGKNFTSRALLEKQKAEGLKRKLIAFEMVDRGIPRHGYELVNAD-GEKIGEVTSGTMSPMRKIGIGMGYVQTAYTALGTEIFIDVRGRKLKAVVVKAPF 359          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_THET8 (Aminomethyltransferase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.423e-15
Identity = 52/137 (37.96%), Postives = 74/137 (54.01%), Query Frame = -2
Query:  187 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTK 594
            SLRLEAG  LYG+++ +   P+     W + K    E  FLG E +L Q       R VG    GG P   +  +    G P+G +TSGG+SP L++ IA+ YV+ G   A    ++EVRG+A    ++ +PFVP K
Sbjct:  225 SLRLEAGFPLYGHELTEETNPLCTPWAWVVKK----EKAFLGKEAMLAQACRE---RLVGLVLEGGIPREGYRVLSG--GRPVGRVTSGGYSPLLQRGIALAYVEEG---AEGPFQVEVRGRAVPAALSPLPFVPLK 349          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_PROA2 (Aminomethyltransferase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.423e-15
Identity = 50/134 (37.31%), Postives = 71/134 (52.99%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPA-RSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLE G  LYG+++ +  +P+EA L W     R  +G F+G E  +  +D  P    VGF        R    V++    P+G + SG  SP LK+ I    V  G  K+GT + +EVRGK Y G + K+PFV
Sbjct:  231 TLRLEMGYPLYGHEINRETSPIEARLKWVT---RLDKGNFVGRESCVA-VDINPQRTVVGFMMHERAIPRQGFTVYNRDRKPLGSVCSGTMSPTLKQPIGTADVPRGYMKSGTPLYLEVRGKFYKGEVVKLPFV 360          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_GEOSW (Aminomethyltransferase OS=Geobacillus sp. (strain WCH70) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.423e-15
Identity = 46/132 (34.85%), Postives = 72/132 (54.55%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LR EA L LYG ++ + +TP+EAGL +A+   + A+  F+G + + KQ +EG   + VG          H       G  IG +T+G  SP LKKNI +  +K+   +  T+V++E+RGK     +   PF
Sbjct:  230 TLRFEATLPLYGQELSKDITPIEAGLGFAVKTNKDAD--FIGKDVLKKQKEEGTARKLVGIEMIDKGIPRHGYKVFANGEEIGFVTTGTQSPTLKKNIGLALIKTEFTEMDTEVEVEIRGKRLKAKVIATPF 359          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_CORA7 (Aminomethyltransferase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.423e-15
Identity = 51/135 (37.78%), Postives = 83/135 (61.48%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAG-GPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYV--KSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            SLRLEAG+ LYGN++ + +TPVEAG++ A  K+   E  F+GAE + ++ +EGP     G  +     AR+ S+V+  + N +G +TSG  SP L   +A+  +   +GL + G  V++++RGK Y   ++ +PF
Sbjct:  236 SLRLEAGMPLYGNELTRDITPVEAGMSRAFAKK---EQDFVGAEVLRQRAEEGPQAVITGLVSSQRRAARAGSEVYVGE-NKVGTVTSGQPSPTLGHPVALALIDTAAGL-EPGAAVEVDIRGKRYPFEVSALPF 365          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_NITEU (Aminomethyltransferase OS=Nitrosomonas europaea GN=gcvT PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.164e-15
Identity = 55/138 (39.86%), Postives = 77/138 (55.80%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRR--VGF-FAGGPPARSHSKVHDEQGNPI--GEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+ LYG DM++ V P+E+GL W +    ++E  F G + +L+      PV R  VG         R+H KV   Q      GEITSGGFSP L ++IA+  + +G+  AG +V + VR K     + K PFV
Sbjct:  227 TLRLEAGMNLYGQDMDETVNPLESGLAWTVD--LKSERDFTGKQTLLE-----TPVNRQLVGLVLLDKGVLRNHQKVITRQEGEAGEGEITSGGFSPTLNQSIALARIPAGI-AAGEQVHVVVRDKQLAAKVVKYPFV 356          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_LEGPL (Aminomethyltransferase OS=Legionella pneumophila (strain Lens) GN=gcvT PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.164e-15
Identity = 47/133 (35.34%), Postives = 74/133 (55.64%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+ LYG DM++  TP+E+GLTW + K    + GF+G   ++ Q  +G   + VG          H +    +G P G ITSG +SP L+++IA+  V     + G +V +++RGK     + K  F+
Sbjct:  226 TLRLEAGMLLYGQDMDETTTPLESGLTWTV-KWEPEDRGFIGMGALVSQKQQGIKRKMVGLTLLDKGIMRHGQKVIIEGCPDGIITSGSYSPTLQQSIALARVPV---ETGEQVLVDIRGKLIPAKVGKPRFI 354          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_DESHY (Aminomethyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=gcvT PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.164e-15
Identity = 53/140 (37.86%), Postives = 77/140 (55.00%), Query Frame = -2
Query:  178 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 594
            +LR EA L LYGN++   +TP+EAGL + +   +  +  F+G E +  Q ++G P + VG        ARSH  +  E G  IG ITSG FSP L KNIA+G +     + G  + + +RGKA      K   +P+ +YK
Sbjct:  232 TLRFEARLPLYGNELGPDITPLEAGLGFFV---KLEKDNFIGKEALSAQKEKGVPRKLVGLEMIERGIARSHYPLQKE-GKEIGFITSGSFSPTLNKNIALGLIPPEYAQIGETLDVIIRGKA-----VKARIIPSLFYK 362          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_DESHD (Aminomethyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=gcvT PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.164e-15
Identity = 53/140 (37.86%), Postives = 77/140 (55.00%), Query Frame = -2
Query:  178 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 594
            +LR EA L LYGN++   +TP+EAGL + +   +  +  F+G E +  Q ++G P + VG        ARSH  +  E G  IG ITSG FSP L KNIA+G +     + G  + + +RGKA      K   +P+ +YK
Sbjct:  232 TLRFEARLPLYGNELGPDITPLEAGLGFFV---KLEKDNFIGKEALSAQKEKGVPRKLVGLEMIERGIARSHYPLQKE-GKEIGFITSGSFSPTLNKNIALGLIPPEYAQIGETLDVIIRGKA-----VKARIIPSLFYK 362          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_THET2 (Aminomethyltransferase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.397e-15
Identity = 52/137 (37.96%), Postives = 74/137 (54.01%), Query Frame = -2
Query:  187 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTK 594
            SLRLEAG  LYG+++ +   P+     W + K    E  FLG E +L Q       R VG    GG P   +  +    G P+G +TSGG+SP L++ IA+ YV+ G   A    ++EVRG+A    ++ +PFVP K
Sbjct:  225 SLRLEAGFPLYGHELTEETNPLCTPWAWVVKK----EKAFLGKEAMLAQACRE---RLVGLVLEGGIPREGYRVLSG--GCPVGRVTSGGYSPLLQRGIALAYVEEG---AEGPFQVEVRGRAVPAALSPLPFVPLK 349          
The following BLAST results are available for this feature:
BLAST of CN189292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
GCST_BACV81.855e-1538.52Aminomethyltransferase OS=Bacteroides vulgatus (st... [more]
GCST_THET82.423e-1537.96Aminomethyltransferase OS=Thermus thermophilus (st... [more]
GCST_PROA22.423e-1537.31Aminomethyltransferase OS=Prosthecochloris aestuar... [more]
GCST_GEOSW2.423e-1534.85Aminomethyltransferase OS=Geobacillus sp. (strain ... [more]
GCST_CORA72.423e-1537.78Aminomethyltransferase OS=Corynebacterium aurimuco... [more]
GCST_NITEU3.164e-1539.86Aminomethyltransferase OS=Nitrosomonas europaea GN... [more]
GCST_LEGPL3.164e-1535.34Aminomethyltransferase OS=Legionella pneumophila (... [more]
GCST_DESHY3.164e-1537.86Aminomethyltransferase OS=Desulfitobacterium hafni... [more]
GCST_DESHD3.164e-1537.86Aminomethyltransferase OS=Desulfitobacterium hafni... [more]
GCST_THET25.397e-1537.96Aminomethyltransferase OS=Thermus thermophilus (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189292 ID=CN189292; Name=CN189292; organism=Citrus sinensis; type=EST; length=595bp
GAGGGCTTTAAAGTAAACACTTTTATTCAGGCAACAAGAATCATAAGAAT
TTGCAGAATTAAAGAACTGCTAGCAATAAAGACAGTAATCTCGAGCAGTC
AATGTTTATGAAACAAGTCAAAACAGGAATCGAGTAGAGCTTCCATAAGC
AGAACCAACAAAGATGTACTAAGACGGCTTGTAGTATTTTGTTGGCACAA
ATGGCATTTTAGTGATGTTTCCATCGTAGGCTTTTCCTCGAACCTCAATC
TTAACTTTTGTGCCTGCCTTGTGCAATCCAGATTTTACATATCCCATGGC
TATATTCTTCTTGAGGCAGGGGCTGAATCCTCCACTGGTAATTTCTCCAA
TGGGATTCCCTTGCTCATCGTGAACCTTACTGTGTGATCTGGCAGGCGGA
CCTCCAGCGAAGAATCCAACACGTCTGACTGGCGGACCTTCGTCAAGTTG
TTTGAGTATTTTCTCAGCACCTAGAAAGCCACCTTCTGCTCTCCTCCTCT
TTCCTATGGCCCATGTCAGTCCAGCTTCTACAGGTGTCACGTGTTGTTCC
ATGTCATTACCATATAAACATAAGCCAGCTTCAAGTCGGAGACTG
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