CN189292

Overview
NameCN189292
Unique NameCN189292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_NITOC (Aminomethyltransferase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.397e-15
Identity = 50/134 (37.31%), Postives = 75/134 (55.97%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPP-ARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+CLYG DM++  TP+E+GL W +   +  E  F+G   +  Q   G P ++VG    G    R+   +    G   G +TSGGFSP L+++IA+  V  G   A    ++++RG+A    + K PFV
Sbjct:  226 TLRLEAGMCLYGADMDETTTPLESGLGWTVA-WKPPERDFIGRAVLEAQQAAGCPHQQVGLLLQGKGLMRNGQTITTNLGE--GVVTSGGFSPSLERSIALARVPVG---ADGPCEVQIRGRAVPAAMVKPPFV 353          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_ANOFW (Aminomethyltransferase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.397e-15
Identity = 46/132 (34.85%), Postives = 68/132 (51.52%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LR EA L LYG ++ + +TP+EAGL +A+   +  +  F G E + KQ +EG P R VG          H          IG +T+G  SP LKKNI +  + +      T+V+++VRGK     +   PF
Sbjct:  230 TLRFEACLPLYGQELAKDITPIEAGLGFAVKTNKDVD--FFGKEILKKQKEEGAPRRLVGIEMIDKGIARHGYAVYVNNEQIGFVTTGTQSPTLKKNIGLALISTAFSSLDTEVEVDVRGKRLKARVVATPF 359          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_SYNP6 (Aminomethyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.049e-15
Identity = 45/132 (34.09%), Postives = 68/132 (51.52%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLEA + LYG++++    P+EAGL W +   R  +  FLG +++++    G   R VG    G     H          +G +TSG +SP L K IA+ YV   L   G ++ +E+RGK     + K PF
Sbjct:  236 TLRLEAAMPLYGHELDTDTNPLEAGLGWVVHLDRNPD--FLGRDRLVQAKTNGLERRLVGLELPGRNIARHGYPVAIADTTVGIVTSGSWSPTLSKAIALAYVPPALANLGQELWVEIRGKQVPATVVKRPF 365          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_SYNE7 (Aminomethyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.049e-15
Identity = 45/132 (34.09%), Postives = 68/132 (51.52%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLEA + LYG++++    P+EAGL W +   R  +  FLG +++++    G   R VG    G     H          +G +TSG +SP L K IA+ YV   L   G ++ +E+RGK     + K PF
Sbjct:  236 TLRLEAAMPLYGHELDTDTNPLEAGLGWVVHLDRNPD--FLGRDRLVQAKTNGLERRLVGLELPGRNIARHGYPVAIADTTVGIVTSGSWSPTLSKAIALAYVPPALANLGQELWVEIRGKQVPATVVKRPF 365          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_PROMT (Aminomethyltransferase OS=Prochlorococcus marinus (strain NATL2A) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.049e-15
Identity = 47/134 (35.07%), Postives = 74/134 (55.22%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLEA + LYGND+    TP EAGL W +         F+G + + KQ + G   + VG      G   + +  +++ +   +G +TSG +SP L+K IA+ YV S + K  T++++E+R K +   I K PF
Sbjct:  238 TLRLEASMHLYGNDINLDTTPFEAGLGWLV--HLEMPNDFIGRKALEKQAEVGTQKKLVGIQVLDKGIARKGYPVLYNSE--TVGIVTSGTWSPTLQKPIALAYVPSEIAKVNTQIEVEIRRKKHPAIIVKRPF 367          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_SYMTH (Aminomethyltransferase OS=Symbiobacterium thermophilum GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 45/134 (33.58%), Postives = 76/134 (56.72%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LR EA L LYG+++     P+EAGL +A+  ++  +  F+G + + +  ++GP  + VG      G P + +       G  +GE+T+G FSP L+KNIA+ YV       GT+V++ +RG+A    + + PF
Sbjct:  239 TLRFEAKLPLYGHEISDQHNPLEAGLGFAVKLKKGVD--FIGRDALARIKEQGPTRKLVGIEMIDRGVPRQGYPVAVG--GEVVGEVTTGSFSPTLEKNIALAYVPVAHSAVGTEVEVIIRGRALKARVVETPF 368          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_RALME (Aminomethyltransferase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 51/139 (36.69%), Postives = 77/139 (55.40%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAG------GPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+ LYG DM+ H +P++AGL+W +    ++E  F+G   +L    +         FAG      G   R+H KV    G+  GEITSG FSP L ++IA   +   +   GT+V++E+R +     + K+PFV
Sbjct:  241 TLRLEAGMNLYGQDMDIHTSPLDAGLSWTVD--LQSERDFIGKSALLASGQQKT-------FAGLILRDKGGVLRAHQKVITPAGD--GEITSGTFSPSLSQSIAFARLPRDI-APGTEVQVEIRDRKLTATVVKLPFV 367          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_LEGPH (Aminomethyltransferase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=gcvT PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 46/133 (34.59%), Postives = 73/133 (54.89%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+ LYG DM++  TP+E+GL W + K    + GF+G   ++ Q  +G   + VG          H +    +G P G ITSG +SP L+++IA+  V     + G +V +++RGK     + K  F+
Sbjct:  226 TLRLEAGMLLYGQDMDETTTPLESGLAWTV-KWEPEDRGFIGMGALVSQKQQGIKRKMVGLTLLDKGIMRHGQKVIIEGCPDGIITSGSYSPTLQQSIALARVPM---ETGEQVLVDIRGKLIPAKVGKPRFI 354          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_LEGPC (Aminomethyltransferase OS=Legionella pneumophila (strain Corby) GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.202e-14
Identity = 46/133 (34.59%), Postives = 73/133 (54.89%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+ LYG DM++  TP+E+GL W + K    + GF+G   ++ Q  +G   + VG          H +    +G P G ITSG +SP L+++IA+  V     + G +V +++RGK     + K  F+
Sbjct:  226 TLRLEAGMLLYGQDMDETTTPLESGLAWTV-KWEPEDRGFIGMGALVSQKQQGIKRKMVGLTLLDKGIMRHGQKVIIEGCPDGIITSGSYSPTLQQSIALARVPV---ETGEQVLVDIRGKLIPAKVGKPRFI 354          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_HERA2 (Aminomethyltransferase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.202e-14
Identity = 50/140 (35.71%), Postives = 72/140 (51.43%), Query Frame = -2
Query:  178 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 594
            SLR E GL LYG+++E+ + P EA L W +   +  +G F+G+E +      GP    VG    G   AR    V    G+ +G +T+G  SP L KN+A   VK+G  K G +V + +R K     + K PF   +Y K
Sbjct:  225 SLRFEPGLALYGHEIERDINPYEAKLGWVV---KLDKGPFIGSEALHDIKANGPVRTLVGLEMTGRGIARQGYPVVALDGSELGVVTTGMPSPSLGKNLAYALVKAGSLKIGAEVDVLIREKPVRATVVKTPFYKARYKK 361          
The following BLAST results are available for this feature:
BLAST of CN189292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
GCST_NITOC5.397e-1537.31Aminomethyltransferase OS=Nitrosococcus oceani (st... [more]
GCST_ANOFW5.397e-1534.85Aminomethyltransferase OS=Anoxybacillus flavitherm... [more]
GCST_SYNP67.049e-1534.09Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_SYNE77.049e-1534.09Aminomethyltransferase OS=Synechococcus elongatus ... [more]
GCST_PROMT7.049e-1535.07Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_SYMTH9.206e-1533.58Aminomethyltransferase OS=Symbiobacterium thermoph... [more]
GCST_RALME9.206e-1536.69Aminomethyltransferase OS=Ralstonia metallidurans ... [more]
GCST_LEGPH9.206e-1534.59Aminomethyltransferase OS=Legionella pneumophila s... [more]
GCST_LEGPC1.202e-1434.59Aminomethyltransferase OS=Legionella pneumophila (... [more]
GCST_HERA21.202e-1435.71Aminomethyltransferase OS=Herpetosiphon aurantiacu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189292 ID=CN189292; Name=CN189292; organism=Citrus sinensis; type=EST; length=595bp
GAGGGCTTTAAAGTAAACACTTTTATTCAGGCAACAAGAATCATAAGAAT
TTGCAGAATTAAAGAACTGCTAGCAATAAAGACAGTAATCTCGAGCAGTC
AATGTTTATGAAACAAGTCAAAACAGGAATCGAGTAGAGCTTCCATAAGC
AGAACCAACAAAGATGTACTAAGACGGCTTGTAGTATTTTGTTGGCACAA
ATGGCATTTTAGTGATGTTTCCATCGTAGGCTTTTCCTCGAACCTCAATC
TTAACTTTTGTGCCTGCCTTGTGCAATCCAGATTTTACATATCCCATGGC
TATATTCTTCTTGAGGCAGGGGCTGAATCCTCCACTGGTAATTTCTCCAA
TGGGATTCCCTTGCTCATCGTGAACCTTACTGTGTGATCTGGCAGGCGGA
CCTCCAGCGAAGAATCCAACACGTCTGACTGGCGGACCTTCGTCAAGTTG
TTTGAGTATTTTCTCAGCACCTAGAAAGCCACCTTCTGCTCTCCTCCTCT
TTCCTATGGCCCATGTCAGTCCAGCTTCTACAGGTGTCACGTGTTGTTCC
ATGTCATTACCATATAAACATAAGCCAGCTTCAAGTCGGAGACTG
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