CN189292

Overview
NameCN189292
Unique NameCN189292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_DECAR (Aminomethyltransferase OS=Dechloromonas aromatica (strain RCB) GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.202e-14
Identity = 48/132 (36.36%), Postives = 78/132 (59.09%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLEAG+ LYG DM++ V+P++AGL W +      +  F+G   ++    +   +  +    G    R H KV  +QG+  GEITSG FSP L+++IA+  +  G+ + G +V++++RGKA    +TK  F
Sbjct:  231 TLRLEAGMNLYGQDMDETVSPLDAGLAWTVS--LNTDRDFVGKAALVTNGQQKQFLGLILLDKG--VLRGHQKVMTKQGD--GEITSGSFSPTLQQSIALARLPLGV-QIGDEVEVDIRGKALKAKVTKPVF 355          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_BURP8 (Aminomethyltransferase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.202e-14
Identity = 53/137 (38.69%), Postives = 77/137 (56.20%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKI----LKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+ LYG DM+  V+P++AGL W +      E  F+G  K+     KQ   G  + +    A G   R+H KV    G   GEITSG FSP ++++IA   V  G+ + G  V +++R KA   ++ K+PFV
Sbjct:  234 TLRLEAGMNLYGQDMDDDVSPLDAGLAWTVDLSAPRE--FIGRAKLEADGSKQSFVGLILHKDNGKAAG-VLRAHQKVVTPNGE--GEITSGTFSPTMQESIAFARVPKGV-QPGDVVHVQIRDKALPASVVKLPFV 364          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_LEGPA (Aminomethyltransferase OS=Legionella pneumophila (strain Paris) GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.051e-14
Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+ LYG DM++  TP+E+GL W + K    + GF+G   +  Q  +G   + VG          H +    +G P G ITSG +SP L+++IA+  V     + G +V +++RGK     + K  F+
Sbjct:  226 TLRLEAGMLLYGQDMDETTTPLESGLAWTV-KWEPEDRGFIGMGALASQKQQGIKRKMVGLTLLDKGIMRHGQKVIIEGCPDGIITSGSYSPTLQQSIALARVPV---ETGEQVLVDIRGKLIPAKVGKPRFI 354          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_DESRM (Aminomethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.051e-14
Identity = 49/134 (36.57%), Postives = 74/134 (55.22%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LR EA L LYG+++   ++P+ AGL W + K  + E  F+G E +LKQ + G   + VG      G P + ++    ++G  +G ITSG F+P L KN+ +GYV+      G ++ I VR K     I K PF
Sbjct:  231 TLRFEACLALYGHELTDDISPLMAGLGWTV-KFNKPE--FVGKEPLLKQKEAGTTYQLVGLEMIDRGIPRQGYAIF--KEGQEVGWITSGTFAPTLGKNMGLGYVEIPFADVGKELNIMVRNKPLKARIVKKPF 359          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_RALPJ (Aminomethyltransferase OS=Ralstonia pickettii (strain 12J) GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.678e-14
Identity = 51/135 (37.78%), Postives = 75/135 (55.56%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFA--GGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+ LYG DM++HV+P++AGL W +    ++E  F G   +      G   + VG      G   R+H KV    G+  GEITSG FSP L  +IA+  +   +   GT V++E+R +     + K+PFV
Sbjct:  241 TLRLEAGMNLYGQDMDEHVSPLDAGLAWTVD--LQSERDFTGKAALQA---GGQREQFVGLILRDKGGVLRAHQKVITAAGD--GEITSGTFSPSLSLSIALARLPKEV-PVGTDVQVEIRDRKLTATVVKLPFV 367          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_PROMP (Aminomethyltransferase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.678e-14
Identity = 49/132 (37.12%), Postives = 66/132 (50.00%), Query Frame = -2
Query:  199 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 594
            +LRLEAG+ LYG D+ +  TP EAGL W +      +  F G E + KQ   G   + VG    G           + G  IG ITSG +SP  +K IA  Y+++        V+I +RGK + G ITK  F
Sbjct:  236 TLRLEAGMHLYGQDLNETTTPYEAGLGWLVHLENNHD--FFGREFLEKQSRFGINKKLVGLNIEGRAIGRKGCEVFKDGENIGTITSGSWSPTKQKAIAFAYIQNSYATLNNVVEILIRGKTFKGTITKRAF 365          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_BURA4 (Aminomethyltransferase OS=Burkholderia ambifaria (strain MC40-6) GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.678e-14
Identity = 49/139 (35.25%), Postives = 75/139 (53.96%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFF------AGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+ LYG DM++ V+P++AGL W +     A   F+G + + +   +G     VG          G   R+H KV    G   GEITSG FSP ++++IA   V + +H  G  + +++R K     + K+PFV
Sbjct:  234 TLRLEAGMNLYGQDMDETVSPLDAGLAWTVD--LSAPRDFVGRDALER---DGTRAAFVGLILQKENGKAGGVLRAHQKVVTPHGE--GEITSGTFSPSMQESIAFARVPAAVH-VGDTIHVQIRDKQLPARVVKLPFV 364          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_GEOTN (Aminomethyltransferase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.498e-14
Identity = 49/139 (35.25%), Postives = 73/139 (52.52%), Query Frame = -2
Query:  178 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 594
            +LR EA L LYG ++   ++P+EAGL +A+  +   E  F+G   + +Q + GPP R VG          H       G   G +T+G  SP LKKNI +  VK+ +   G +V++++RGK       K   VPT +YK
Sbjct:  230 TLRFEACLPLYGQELSATISPLEAGLGFAV--KTEKEPPFIGQAVLKQQKEAGPPRRLVGIEMIDKGIPRHGYRVFAAGEEAGFVTTGTQSPTLKKNIGLALVKAEVAAIGQEVEVDIRGKR-----LKATIVPTPFYK 361          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_CHRVO (Aminomethyltransferase OS=Chromobacterium violaceum GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.498e-14
Identity = 54/134 (40.30%), Postives = 74/134 (55.22%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+ LYG+DM++ V+P+EAG+ W I     AE  F G E +  Q   G  +++VG    G    R   KV  E     G ITSG FSP LK +IA+  V +     G   ++++RG   D  + KMPFV
Sbjct:  226 TLRLEAGMNLYGHDMDETVSPLEAGMGWTIA-WEPAERKFNGREALEAQKAAGVKMKQVGLVLEGRGVLREGLKVVVESVGE-GVITSGTFSPTLKHSIAIARVPAA---TGAAAQVDLRGTLTDVRVVKMPFV 354          
BLAST of CN189292 vs. ExPASy Swiss-Prot
Match: GCST_RALSO (Aminomethyltransferase OS=Ralstonia solanacearum GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.569e-14
Identity = 50/135 (37.04%), Postives = 75/135 (55.56%), Query Frame = -2
Query:  196 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFA--GGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 594
            +LRLEAG+ LYG DM++HV+P++AGL W +    ++E  F G   +      G   + VG      G   R+H KV    G+  GEITSG FSP L ++IA+  +   +   G  V++E+R +     + K+PFV
Sbjct:  241 TLRLEAGMNLYGQDMDEHVSPLDAGLAWTVD--LQSERDFNGKAALAA---NGQRDQFVGLLLRDKGGVLRAHQKVITAAGD--GEITSGTFSPSLSQSIALARLPKDV-AIGADVQVEIRDRRLTATVVKLPFV 367          
The following BLAST results are available for this feature:
BLAST of CN189292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
GCST_DECAR1.202e-1436.36Aminomethyltransferase OS=Dechloromonas aromatica ... [more]
GCST_BURP81.202e-1438.69Aminomethyltransferase OS=Burkholderia phymatum (s... [more]
GCST_LEGPA2.051e-1434.59Aminomethyltransferase OS=Legionella pneumophila (... [more]
GCST_DESRM2.051e-1436.57Aminomethyltransferase OS=Desulfotomaculum reducen... [more]
GCST_RALPJ2.678e-1437.78Aminomethyltransferase OS=Ralstonia pickettii (str... [more]
GCST_PROMP2.678e-1437.12Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_BURA42.678e-1435.25Aminomethyltransferase OS=Burkholderia ambifaria (... [more]
GCST_GEOTN3.498e-1435.25Aminomethyltransferase OS=Geobacillus thermodenitr... [more]
GCST_CHRVO3.498e-1440.30Aminomethyltransferase OS=Chromobacterium violaceu... [more]
GCST_RALSO4.569e-1437.04Aminomethyltransferase OS=Ralstonia solanacearum G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001K02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189292 ID=CN189292; Name=CN189292; organism=Citrus sinensis; type=EST; length=595bp
GAGGGCTTTAAAGTAAACACTTTTATTCAGGCAACAAGAATCATAAGAAT
TTGCAGAATTAAAGAACTGCTAGCAATAAAGACAGTAATCTCGAGCAGTC
AATGTTTATGAAACAAGTCAAAACAGGAATCGAGTAGAGCTTCCATAAGC
AGAACCAACAAAGATGTACTAAGACGGCTTGTAGTATTTTGTTGGCACAA
ATGGCATTTTAGTGATGTTTCCATCGTAGGCTTTTCCTCGAACCTCAATC
TTAACTTTTGTGCCTGCCTTGTGCAATCCAGATTTTACATATCCCATGGC
TATATTCTTCTTGAGGCAGGGGCTGAATCCTCCACTGGTAATTTCTCCAA
TGGGATTCCCTTGCTCATCGTGAACCTTACTGTGTGATCTGGCAGGCGGA
CCTCCAGCGAAGAATCCAACACGTCTGACTGGCGGACCTTCGTCAAGTTG
TTTGAGTATTTTCTCAGCACCTAGAAAGCCACCTTCTGCTCTCCTCCTCT
TTCCTATGGCCCATGTCAGTCCAGCTTCTACAGGTGTCACGTGTTGTTCC
ATGTCATTACCATATAAACATAAGCCAGCTTCAAGTCGGAGACTG
back to top