CN189291

Overview
NameCN189291
Unique NameCN189291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5170 contig Csv1_Contig5170:1052..1637. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_CANFA (Aminomethyltransferase, mitochondrial OS=Canis familiaris GN=AMT PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.750e-32
Identity = 69/133 (51.88%), Postives = 87/133 (65.41%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 410
            AGLCLYG+D+++H TPVE  L+W +GKRRRA   F GA  I+ QL      RRVG    G P R+HS + + +G  IG +TSG  SPCLKKN+AMGYV S   + GT + +EVR K     ++KMPFV T YY
Sbjct:  268 AGLCLYGSDIDEHTTPVEGSLSWTLGKRRRAAMDFPGASVIIAQLKGKVQRRRVGLTCEGAPVRAHSPILNMEGTVIGTVTSGCPSPCLKKNVAMGYVPSEYSRPGTPLLVEVRRKQQMAVVSKMPFVTTNYY 400          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_BOVIN (Aminomethyltransferase, mitochondrial OS=Bos taurus GN=AMT PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.691e-32
Identity = 68/133 (51.13%), Postives = 84/133 (63.16%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 410
            AGLCLYGND+++H TPVE  L+W +GKRRRA   F GA  I+ QL      RRVG    G P R+ S +   +G  IG +TSG  SPCLKKN+AMGYV     + GT + +EVR K     ++KMPFV T YY
Sbjct:  262 AGLCLYGNDIDEHTTPVEGSLSWTLGKRRRAAMDFPGASVIVPQLKSKAQRRRVGLMCDGAPVRAQSPILSPEGTVIGAVTSGCPSPCLKKNVAMGYVPYEYSRPGTPLLVEVRRKQQPAVVSKMPFVSTNYY 394          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_MOUSE (Aminomethyltransferase, mitochondrial OS=Mus musculus GN=Amt PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.365e-31
Identity = 68/133 (51.13%), Postives = 87/133 (65.41%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 410
            AGLCLYGND+++H TPVE  L+W +GKRRR    F GA+ I+ QL      RRVG    G P R+HS + + +G  IG +TSG  SP LKKN+AMGYV     + GT++ +EVR K     ++KMPFVPT YY
Sbjct:  268 AGLCLYGNDIDEHTTPVEGSLSWTLGKRRRIAMDFPGAKIIVPQLKGEVQRRRVGLICEGAPVRAHSPILNTEGTVIGTVTSGCPSPSLKKNVAMGYVPFKYSRPGTQLLVEVRRKQQMTVVSKMPFVPTNYY 400          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_DICDI (Aminomethyltransferase, mitochondrial OS=Dictyostelium discoideum GN=gcvT PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.971e-31
Identity = 69/136 (50.74%), Postives = 87/136 (63.97%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLD-EGPPVRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 413
            AGLCLYG+D+   +TP+EA L W I KRRR EGGF GA  I KQL  +G P +RVG    G PAR    + D   N  IG++TSG  SP  +++I+M YVK+   K GT+V + +RGK     I+KMPFVPT Y K
Sbjct:  267 AGLCLYGHDLNDDITPIEASLNWLISKRRREEGGFPGASIIQKQLQKDGCPQKRVGVIINGAPAREGCLILDPSTNQEIGKVTSGTISPITRQSISMAYVKTPFSKIGTQVNVSIRGKPITATISKMPFVPTNYKK 402          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_YEAST (Aminomethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=GCV1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 3.370e-22
Identity = 62/143 (43.36%), Postives = 83/143 (58.04%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRR----AEGGFLGAEKILKQLDEGPPVR-RVGF--FAGGPPARSHSKVH-DEQGNPIGEITSGGFSPCLKK-NIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 413
            AG+CLYG+++++ +TPVEA L W I K RR     +  F G  KI+ QL+     + RVGF     GP AR+  K+   +    +G +TSG  SP L   NI   YV+ G HK GTK+ ++VR K Y   + KMP VPT YYK
Sbjct:  257 AGMCLYGHELDESITPVEAALNWVISKSRRDLVDQKYWFNGYAKIMDQLNNKTYSKVRVGFKYLKKGPAARNGVKIFLPDAETEVGLVTSGSASPTLNNINIGQAYVQKGYHKKGTKLLVQVRNKFYPIELAKMPLVPTHYYK 399          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_HALOH (Aminomethyltransferase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=gcvT PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.952e-18
Identity = 47/127 (37.01%), Postives = 69/127 (54.33%), Query Frame = 3
Query:   15 GLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 395
            G CLYGND++++  P+EAGL W +   +  +  F+G   +LK  +EG   + VGF   G     H     + G+ IG +TSG  SP L + I MGYV+      G  + I VR +A  G + K+PF+
Sbjct:  234 GYCLYGNDIDENTHPLEAGLGWTV---KFDKASFIGKRALLKYKEEGLSRKLVGFKLKGRGIPRHGYPIKDNGDQIGVVTSGSMSPTLSEGIGMGYVRYDKATPGESITIVVRNRAITGEVVKLPFI 357          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_PROMM (Aminomethyltransferase OS=Prochlorococcus marinus (strain MIT 9313) GN=gcvT PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.855e-18
Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 419
            A + LYG DM+ + TP EAGL W +     A   F+G   + +Q ++GP  R VG    G     H        N +GEITSG +SP L++ IA+GY+ + L + G +V++E+RGK +   + K PF    Y +PS
Sbjct:  243 AAMHLYGQDMDINTTPFEAGLGWLVHLEMPAP--FMGRTALEQQAEQGPIRRLVGLKLSGRAIARHGYPLLHNNNKVGEITSGTWSPSLEEAIALGYLPTALARIGNEVEVEIRGKHHRATVVKRPF----YRRPS 372          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_THEM4 (Aminomethyltransferase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.576e-18
Identity = 50/127 (39.37%), Postives = 71/127 (55.91%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            A L LYGNDM++ +TP+E G+ WA+    + E  F+G E + +QL+EG   R  GF         H     + G  IG +TSG FSP L + I M  ++ G +K+G  ++IE+R K     I KMPF
Sbjct:  231 ASLLLYGNDMDETITPLEVGIKWAV----KFEKDFMGKEALKRQLEEGTSRRLKGFKIIDKGIARHGYKVFKDGKEIGYVTSGTFSPTLNQAIGMALIEKG-YKSGEIIEIEIRNKLVKAEIVKMPF 352          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_PROM3 (Aminomethyltransferase OS=Prochlorococcus marinus (strain MIT 9303) GN=gcvT PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.122e-17
Identity = 51/136 (37.50%), Postives = 73/136 (53.68%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 419
            A + LYG DM+ + TP EAGL W +     A   F+G   + +Q ++GP  R VG    G     H        N +GEITSG +SP L + IA+GY+ + L + G +V +E+RGK +   + K PF    Y +PS
Sbjct:  243 AAMHLYGQDMDINTTPFEAGLGWLVHLEMPAP--FMGRTALEQQAEQGPIRRLVGLKLSGRAIARHGYPLLHNNNKVGEITSGTWSPSLGEAIALGYLPTALARIGNEVAVEIRGKHHPATVVKRPF----YRRPS 372          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_PARD8 (Aminomethyltransferase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=gcvT PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.263e-17
Identity = 52/128 (40.62%), Postives = 68/128 (53.12%), Query Frame = 3
Query:   15 GLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEG-GFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHS-KVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            G CLYGND++   +P+EAGL W     + AEG  F    ++ +Q  EG   +   F         H  ++ D +GN IG +TSG  SP LKK I MGYVK    KAGT + I+VR K     + K PF
Sbjct:  235 GFCLYGNDLDDTTSPIEAGLGWIT---KFAEGKNFTNRAELERQKKEGVTRKLCAFELQEKGIPRHGYEIADAEGNVIGVVTSGTMSPVLKKGIGMGYVKPEFAKAGTDIFIKVRNKNLKAQVVKAPF 359          
The following BLAST results are available for this feature:
BLAST of CN189291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
GCST_CANFA2.750e-3251.88Aminomethyltransferase, mitochondrial OS=Canis fam... [more]
GCST_BOVIN4.691e-3251.13Aminomethyltransferase, mitochondrial OS=Bos tauru... [more]
GCST_MOUSE1.365e-3151.13Aminomethyltransferase, mitochondrial OS=Mus muscu... [more]
GCST_DICDI3.971e-3150.74Aminomethyltransferase, mitochondrial OS=Dictyoste... [more]
GCST_YEAST3.370e-2243.36Aminomethyltransferase, mitochondrial OS=Saccharom... [more]
GCST_HALOH2.952e-1837.01Aminomethyltransferase OS=Halothermothrix orenii (... [more]
GCST_PROMM3.855e-1837.50Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_THEM46.576e-1839.37Aminomethyltransferase OS=Thermosipho melanesiensi... [more]
GCST_PROM31.122e-1737.50Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_PARD84.263e-1740.63Aminomethyltransferase OS=Parabacteroides distason... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189291 ID=CN189291; Name=CN189291; organism=Citrus sinensis; type=EST; length=589bp
CTCCGACTTAAGCTGGCTTATGTTTATATGGTAATGACATGGAACAACAC
GTGACACCTGTAGAAGCTGGACTGACATGGGCCATAGGAAAGAGGAGGAG
AGCAGAAGGTGGCTTTCTAGGTGCTGAGAAAATACTCAAACAACTTGACG
AAGGTCCGCCAGTCAGACGTGTTGGATTCTTCGCTGGAGGTCCGCCTGCC
AGATCACACAGTAAGGTTCACGATGAGCAAGGGAATCCCATTGGAGAAAT
TACCAGTGGAGGATTCAGCCCCTGCCTCAAGAAGAATATAGCCATGGGAT
ATGTAAAATCTGGATTGCACAAGGCAGGCACAAAAGTTAAGATTGAGGTT
CGAGGAAAAGCCTACGATGGAAACATCACTAAAATGCCATTTGTGCCAAC
AAAATACTACAAGCCGTCTTAGTACATCTTTGTTGGTTCTGCTTATGGAA
GCTCTACTCGATTCCTGTTTTGACTTGTTTCATAAACATTGACTGCTCGA
GATTACTGTCTTTATTGCTAGCAGTTCTTTAATTCTGCAAATTCTTATGA
TTCTTGTTGCCTGAATAAAAGTGTTTACTTTAAAGCCCT
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